miRNA display CGI


Results 61 - 80 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 3' -53.4 NC_001875.2 + 54161 0.7 0.82724
Target:  5'- cGCGCAaauacgCGCUCGGacaGCgGCGCuGCGUUGg -3'
miRNA:   3'- -UGCGUa-----GCGAGUUg--UG-CGCG-UGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 41449 0.69 0.844239
Target:  5'- cGCGCAcaggCGCcgguugCGGCGCGCGCgGCGUg- -3'
miRNA:   3'- -UGCGUa---GCGa-----GUUGUGCGCG-UGCAac -5'
6804 3' -53.4 NC_001875.2 + 131217 0.76 0.484542
Target:  5'- aACGCAgggcgCGCUUGACaACGCGCugGUg- -3'
miRNA:   3'- -UGCGUa----GCGAGUUG-UGCGCGugCAac -5'
6804 3' -53.4 NC_001875.2 + 50120 0.74 0.575861
Target:  5'- gGCGCAauaauaaacagUCGCUCggUGCGCGCGgGUg- -3'
miRNA:   3'- -UGCGU-----------AGCGAGuuGUGCGCGUgCAac -5'
6804 3' -53.4 NC_001875.2 + 113810 0.72 0.680928
Target:  5'- uCGCAUUGCacgUCAAUGuCGCGCGCGUa- -3'
miRNA:   3'- uGCGUAGCG---AGUUGU-GCGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 89778 0.71 0.742481
Target:  5'- gGCGacgCGCUCGuGCACGUGCGCGa-- -3'
miRNA:   3'- -UGCguaGCGAGU-UGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 18280 0.71 0.762288
Target:  5'- cGCGCcgUGCgCGAC-CGCGC-CGUUGa -3'
miRNA:   3'- -UGCGuaGCGaGUUGuGCGCGuGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 114233 0.7 0.781604
Target:  5'- -aGCAacUUGCUCAGCugGCGCAUc--- -3'
miRNA:   3'- ugCGU--AGCGAGUUGugCGCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 89093 0.7 0.791054
Target:  5'- aGCGCGcCGCUCAccaugcgcgucGC-CGCGCGCGa-- -3'
miRNA:   3'- -UGCGUaGCGAGU-----------UGuGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 59915 0.7 0.800352
Target:  5'- cGCGCGgucaaggCGCUCGcCgACGCGCACGc-- -3'
miRNA:   3'- -UGCGUa------GCGAGUuG-UGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 93561 0.67 0.932718
Target:  5'- cCGCGUCGUcguACGCGCGCuGCGa-- -3'
miRNA:   3'- uGCGUAGCGaguUGUGCGCG-UGCaac -5'
6804 3' -53.4 NC_001875.2 + 69595 0.67 0.932718
Target:  5'- uACGUGUggCGCUUuACGCgGCGCGCGUc- -3'
miRNA:   3'- -UGCGUA--GCGAGuUGUG-CGCGUGCAac -5'
6804 3' -53.4 NC_001875.2 + 44792 0.68 0.883038
Target:  5'- -aGCAcCGCUUugAACACGUGCGCuUUGa -3'
miRNA:   3'- ugCGUaGCGAG--UUGUGCGCGUGcAAC- -5'
6804 3' -53.4 NC_001875.2 + 113362 0.68 0.883038
Target:  5'- cUGCGUCGCUgCGGCGCG-GCGCa--- -3'
miRNA:   3'- uGCGUAGCGA-GUUGUGCgCGUGcaac -5'
6804 3' -53.4 NC_001875.2 + 12659 0.68 0.896946
Target:  5'- cAUGCuGUUGUU-GACGCGCGCcGCGUUGg -3'
miRNA:   3'- -UGCG-UAGCGAgUUGUGCGCG-UGCAAC- -5'
6804 3' -53.4 NC_001875.2 + 28525 0.68 0.903534
Target:  5'- cACGCGUCGCcCGGCACGcCGguCa--- -3'
miRNA:   3'- -UGCGUAGCGaGUUGUGC-GCguGcaac -5'
6804 3' -53.4 NC_001875.2 + 118286 0.67 0.909875
Target:  5'- cACGCAagagUgGCUgCAGCugGCGCGC-UUGc -3'
miRNA:   3'- -UGCGU----AgCGA-GUUGugCGCGUGcAAC- -5'
6804 3' -53.4 NC_001875.2 + 104517 0.67 0.921803
Target:  5'- aACGcCGUCcgGCUUuuGCACGCGCAUGg-- -3'
miRNA:   3'- -UGC-GUAG--CGAGu-UGUGCGCGUGCaac -5'
6804 3' -53.4 NC_001875.2 + 86400 0.67 0.924067
Target:  5'- aGCGCcgaGUUCGACGCGCaaaacaaccugcgcgGCACGUUu -3'
miRNA:   3'- -UGCGuagCGAGUUGUGCG---------------CGUGCAAc -5'
6804 3' -53.4 NC_001875.2 + 94798 0.67 0.927387
Target:  5'- cCGCG-CGCgugCAGCGcCGUGCACGg-- -3'
miRNA:   3'- uGCGUaGCGa--GUUGU-GCGCGUGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.