miRNA display CGI


Results 1 - 20 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 5' -58.6 NC_001875.2 + 55321 0.66 0.804275
Target:  5'- -gUGGCGCGCGAcggugaugacGCGCC-GCuUCGGGg -3'
miRNA:   3'- cgGCCGCGCGUU----------UGCGGcCGcAGUUC- -5'
6804 5' -58.6 NC_001875.2 + 82373 0.66 0.804275
Target:  5'- uCgGGCGCGCGcggaaccacGGCGCCGuccacCGUCAGc -3'
miRNA:   3'- cGgCCGCGCGU---------UUGCGGCc----GCAGUUc -5'
6804 5' -58.6 NC_001875.2 + 32239 0.66 0.804275
Target:  5'- cGCCaaCGCGCAGACauaCCGGCG-CGAc -3'
miRNA:   3'- -CGGccGCGCGUUUGc--GGCCGCaGUUc -5'
6804 5' -58.6 NC_001875.2 + 120668 0.66 0.804275
Target:  5'- -aCGGCGCGCAAcuugucgaugcGCGCgCGGUacgccuccccGUCGGc -3'
miRNA:   3'- cgGCCGCGCGUU-----------UGCG-GCCG----------CAGUUc -5'
6804 5' -58.6 NC_001875.2 + 36804 0.66 0.804275
Target:  5'- uGCaCGGUGCGCGuuacGCGCC-GCGgCAGu -3'
miRNA:   3'- -CG-GCCGCGCGUu---UGCGGcCGCaGUUc -5'
6804 5' -58.6 NC_001875.2 + 33926 0.66 0.804275
Target:  5'- cGUCGaaaCGCaGCGGGCGUCGGCGcCGAc -3'
miRNA:   3'- -CGGCc--GCG-CGUUUGCGGCCGCaGUUc -5'
6804 5' -58.6 NC_001875.2 + 102908 0.66 0.803397
Target:  5'- gGCCGGcCGUugaagcggaggugGCGGAUGaCCGGCuGUgCAAGa -3'
miRNA:   3'- -CGGCC-GCG-------------CGUUUGC-GGCCG-CA-GUUC- -5'
6804 5' -58.6 NC_001875.2 + 119008 0.66 0.802518
Target:  5'- aGCCGGCGcCGCcggguuuguguucgaAGACGCCuacguagacugguccGGCGUg--- -3'
miRNA:   3'- -CGGCCGC-GCG---------------UUUGCGG---------------CCGCAguuc -5'
6804 5' -58.6 NC_001875.2 + 110175 0.66 0.802518
Target:  5'- gGgCGGCGuCGCAcugcgcucguccGCGCUGGCGUUuGGc -3'
miRNA:   3'- -CgGCCGC-GCGUu-----------UGCGGCCGCAGuUC- -5'
6804 5' -58.6 NC_001875.2 + 60175 0.66 0.802518
Target:  5'- uGUCGGCggcacaaauacaGCGCuucguugaauuGCGCCGGCGgCAGa -3'
miRNA:   3'- -CGGCCG------------CGCGuu---------UGCGGCCGCaGUUc -5'
6804 5' -58.6 NC_001875.2 + 114892 0.66 0.795432
Target:  5'- cGCUGGUuggucacgugGCGCAAcGCGCCGauGCGcUCAAa -3'
miRNA:   3'- -CGGCCG----------CGCGUU-UGCGGC--CGC-AGUUc -5'
6804 5' -58.6 NC_001875.2 + 57338 0.66 0.795432
Target:  5'- -gCGGCaGCGCu-GCGCgCGGCGaaaccgCAAGu -3'
miRNA:   3'- cgGCCG-CGCGuuUGCG-GCCGCa-----GUUC- -5'
6804 5' -58.6 NC_001875.2 + 74507 0.66 0.795432
Target:  5'- cGCC-GCGCGC-AGCGCUGccgcaacaauuGCGUCGc- -3'
miRNA:   3'- -CGGcCGCGCGuUUGCGGC-----------CGCAGUuc -5'
6804 5' -58.6 NC_001875.2 + 17664 0.66 0.795432
Target:  5'- cGCUGGCG-GUGAA-GCUGGCGUUuAGc -3'
miRNA:   3'- -CGGCCGCgCGUUUgCGGCCGCAGuUC- -5'
6804 5' -58.6 NC_001875.2 + 92177 0.66 0.795432
Target:  5'- cGCCGcCGCGCGc-CGCCGGCc-CAAa -3'
miRNA:   3'- -CGGCcGCGCGUuuGCGGCCGcaGUUc -5'
6804 5' -58.6 NC_001875.2 + 43767 0.66 0.795432
Target:  5'- cGCgGGCguuuGCGCAGacguaacguACGCgGGCGUUg-- -3'
miRNA:   3'- -CGgCCG----CGCGUU---------UGCGgCCGCAGuuc -5'
6804 5' -58.6 NC_001875.2 + 2810 0.66 0.795432
Target:  5'- uCUGGCgaGCGCGAGCGC-GGCGacguuggCGAGu -3'
miRNA:   3'- cGGCCG--CGCGUUUGCGgCCGCa------GUUC- -5'
6804 5' -58.6 NC_001875.2 + 91615 0.66 0.795432
Target:  5'- cGCUaaacacGCGCGUuu-CGCCGGCGcCAAu -3'
miRNA:   3'- -CGGc-----CGCGCGuuuGCGGCCGCaGUUc -5'
6804 5' -58.6 NC_001875.2 + 11278 0.66 0.792751
Target:  5'- gGCCGGCGCGCucGCucaaaacaacagcuGCCaacauGGCGUa--- -3'
miRNA:   3'- -CGGCCGCGCGuuUG--------------CGG-----CCGCAguuc -5'
6804 5' -58.6 NC_001875.2 + 99924 0.66 0.786446
Target:  5'- gGCCGcGCGCGCGGugcaGCgCGGC--CAAGu -3'
miRNA:   3'- -CGGC-CGCGCGUUug--CG-GCCGcaGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.