miRNA display CGI


Results 1 - 20 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 5' -58.6 NC_001875.2 + 40223 0.66 0.768075
Target:  5'- uUCGGCGCaGCAAAUugcccaagaGCCGgGUGUgCAAGa -3'
miRNA:   3'- cGGCCGCG-CGUUUG---------CGGC-CGCA-GUUC- -5'
6804 5' -58.6 NC_001875.2 + 30454 0.66 0.758709
Target:  5'- aGCUGGCGCGCGuuGCGC--GCGUUu-- -3'
miRNA:   3'- -CGGCCGCGCGUu-UGCGgcCGCAGuuc -5'
6804 5' -58.6 NC_001875.2 + 36716 0.66 0.777324
Target:  5'- gGCCguGGCGCGCuccacAACGguuaGGCGcUCGAGg -3'
miRNA:   3'- -CGG--CCGCGCGu----UUGCgg--CCGC-AGUUC- -5'
6804 5' -58.6 NC_001875.2 + 124978 0.66 0.776405
Target:  5'- cGUCGcCGCGCGucCGCUuuacgugcaaguuGGCGUCGGGc -3'
miRNA:   3'- -CGGCcGCGCGUuuGCGG-------------CCGCAGUUC- -5'
6804 5' -58.6 NC_001875.2 + 32121 0.66 0.768075
Target:  5'- --aGGCGCGCAcuugcgAGCGCCGcauaGCGcUCAAc -3'
miRNA:   3'- cggCCGCGCGU------UUGCGGC----CGC-AGUUc -5'
6804 5' -58.6 NC_001875.2 + 36577 0.66 0.765278
Target:  5'- cGCgCGGCuguugcaaaaugcgGCGCAGcCGCUGcGCGUCGc- -3'
miRNA:   3'- -CG-GCCG--------------CGCGUUuGCGGC-CGCAGUuc -5'
6804 5' -58.6 NC_001875.2 + 88025 0.66 0.758709
Target:  5'- cGCC--CGCGCAAACGCCcGCG-CAGc -3'
miRNA:   3'- -CGGccGCGCGUUUGCGGcCGCaGUUc -5'
6804 5' -58.6 NC_001875.2 + 6201 0.66 0.776405
Target:  5'- cGCCGuuucaaaGCGCGCAAuugcgucCGUCGGCGaCAc- -3'
miRNA:   3'- -CGGC-------CGCGCGUUu------GCGGCCGCaGUuc -5'
6804 5' -58.6 NC_001875.2 + 75682 0.66 0.768075
Target:  5'- -aUGGCGUu--GGCGUCGGCGUCGGc -3'
miRNA:   3'- cgGCCGCGcguUUGCGGCCGCAGUUc -5'
6804 5' -58.6 NC_001875.2 + 90443 0.66 0.758709
Target:  5'- -aCGcGCGCGCAGagGCGUCGGUGggCGGc -3'
miRNA:   3'- cgGC-CGCGCGUU--UGCGGCCGCa-GUUc -5'
6804 5' -58.6 NC_001875.2 + 44195 0.66 0.776405
Target:  5'- cGUCGGCGCGUGAAacagcgaguuuuUGUaaugguacucguaCGGCGUCAGc -3'
miRNA:   3'- -CGGCCGCGCGUUU------------GCG-------------GCCGCAGUUc -5'
6804 5' -58.6 NC_001875.2 + 48392 0.66 0.777324
Target:  5'- -gCGGCGa-CAggUGCCGGC-UCGGGa -3'
miRNA:   3'- cgGCCGCgcGUuuGCGGCCGcAGUUC- -5'
6804 5' -58.6 NC_001875.2 + 84414 0.66 0.758709
Target:  5'- cGgCGGCGCGUauAggUGCCaucGGCGgaUCGGGa -3'
miRNA:   3'- -CgGCCGCGCG--UuuGCGG---CCGC--AGUUC- -5'
6804 5' -58.6 NC_001875.2 + 12309 0.66 0.768075
Target:  5'- cGCCGuGUGCGUGGucaacGCGCCcGGCcagCGAGa -3'
miRNA:   3'- -CGGC-CGCGCGUU-----UGCGG-CCGca-GUUC- -5'
6804 5' -58.6 NC_001875.2 + 24061 0.66 0.757767
Target:  5'- aCCGGCGUcugGUucguuuuGGGCGgCGGCGUUGAGu -3'
miRNA:   3'- cGGCCGCG---CG-------UUUGCgGCCGCAGUUC- -5'
6804 5' -58.6 NC_001875.2 + 31994 0.66 0.768075
Target:  5'- gGCCGGUuuGUGAGCGgCGGCGacgCAGc -3'
miRNA:   3'- -CGGCCGcgCGUUUGCgGCCGCa--GUUc -5'
6804 5' -58.6 NC_001875.2 + 120668 0.66 0.804275
Target:  5'- -aCGGCGCGCAAcuugucgaugcGCGCgCGGUacgccuccccGUCGGc -3'
miRNA:   3'- cgGCCGCGCGUU-----------UGCG-GCCG----------CAGUUc -5'
6804 5' -58.6 NC_001875.2 + 47647 0.66 0.767144
Target:  5'- aCCGGCagcuguuGCGCAAACGCaCGGaCG-CGGc -3'
miRNA:   3'- cGGCCG-------CGCGUUUGCG-GCC-GCaGUUc -5'
6804 5' -58.6 NC_001875.2 + 70859 0.66 0.777324
Target:  5'- -gCGGUGCGCcAGCGCCGaccCGcuuUCGAGa -3'
miRNA:   3'- cgGCCGCGCGuUUGCGGCc--GC---AGUUC- -5'
6804 5' -58.6 NC_001875.2 + 51322 0.66 0.758709
Target:  5'- cGUCGGCcagcuCGCAcGCGCCauGGUGUCGu- -3'
miRNA:   3'- -CGGCCGc----GCGUuUGCGG--CCGCAGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.