miRNA display CGI


Results 1 - 20 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 5' -58.6 NC_001875.2 + 62400 1.09 0.001481
Target:  5'- gGCCGGCGCGCAAACGCCGGCGUCAAGc -3'
miRNA:   3'- -CGGCCGCGCGUUUGCGGCCGCAGUUC- -5'
6804 5' -58.6 NC_001875.2 + 74313 0.85 0.070593
Target:  5'- -aCGGCGCGCAGGCGCCggacagcacgGGCGUCAAa -3'
miRNA:   3'- cgGCCGCGCGUUUGCGG----------CCGCAGUUc -5'
6804 5' -58.6 NC_001875.2 + 49862 0.83 0.094286
Target:  5'- gGCCGGCGCGCcu-UGCCGGCGcCAAc -3'
miRNA:   3'- -CGGCCGCGCGuuuGCGGCCGCaGUUc -5'
6804 5' -58.6 NC_001875.2 + 90040 0.82 0.107394
Target:  5'- cGCCGGCGCGCG--UGCCGGCGgaaaucaCAAGc -3'
miRNA:   3'- -CGGCCGCGCGUuuGCGGCCGCa------GUUC- -5'
6804 5' -58.6 NC_001875.2 + 66356 0.8 0.149867
Target:  5'- --aGGCGCGCAuccaGUCGGCGUCGAGg -3'
miRNA:   3'- cggCCGCGCGUuug-CGGCCGCAGUUC- -5'
6804 5' -58.6 NC_001875.2 + 18690 0.79 0.17863
Target:  5'- -aCGGCGCGC--GCGCCGGCGUgCAc- -3'
miRNA:   3'- cgGCCGCGCGuuUGCGGCCGCA-GUuc -5'
6804 5' -58.6 NC_001875.2 + 94255 0.78 0.192395
Target:  5'- gGCCGGCcgcgGCGCucGCGCCGGCG-CAu- -3'
miRNA:   3'- -CGGCCG----CGCGuuUGCGGCCGCaGUuc -5'
6804 5' -58.6 NC_001875.2 + 128019 0.77 0.212189
Target:  5'- cGCCGGCGUGCGccgacGACgGCCGGUGgUCGAc -3'
miRNA:   3'- -CGGCCGCGCGU-----UUG-CGGCCGC-AGUUc -5'
6804 5' -58.6 NC_001875.2 + 115080 0.77 0.212189
Target:  5'- -gCGGCGCGCAgucacGACGCCGGgcUGUCAAa -3'
miRNA:   3'- cgGCCGCGCGU-----UUGCGGCC--GCAGUUc -5'
6804 5' -58.6 NC_001875.2 + 3141 0.77 0.222728
Target:  5'- aGCCcGCuGCGCGGACG-CGGCGUCGGGc -3'
miRNA:   3'- -CGGcCG-CGCGUUUGCgGCCGCAGUUC- -5'
6804 5' -58.6 NC_001875.2 + 63730 0.77 0.228162
Target:  5'- -aCGGCGgGCGcuuCGCCGGCGUCGc- -3'
miRNA:   3'- cgGCCGCgCGUuu-GCGGCCGCAGUuc -5'
6804 5' -58.6 NC_001875.2 + 3062 0.77 0.228162
Target:  5'- --aGGCGCGCAGcggcGCGCCGGgGUCGc- -3'
miRNA:   3'- cggCCGCGCGUU----UGCGGCCgCAGUuc -5'
6804 5' -58.6 NC_001875.2 + 93199 0.77 0.233709
Target:  5'- gGCCaGCGCGCAAuACG-CGGCGUCAc- -3'
miRNA:   3'- -CGGcCGCGCGUU-UGCgGCCGCAGUuc -5'
6804 5' -58.6 NC_001875.2 + 65797 0.77 0.239368
Target:  5'- cGUCGGCGCGCGGugccUGCgCGGCGcCAAGc -3'
miRNA:   3'- -CGGCCGCGCGUUu---GCG-GCCGCaGUUC- -5'
6804 5' -58.6 NC_001875.2 + 81357 0.76 0.257034
Target:  5'- uGCC-GCGCGCAcGCGCCGGCcgcGUCGc- -3'
miRNA:   3'- -CGGcCGCGCGUuUGCGGCCG---CAGUuc -5'
6804 5' -58.6 NC_001875.2 + 59084 0.76 0.260693
Target:  5'- gGCCGGCGCGgAAACGguuuccaggcugaCGGCGUCGc- -3'
miRNA:   3'- -CGGCCGCGCgUUUGCg------------GCCGCAGUuc -5'
6804 5' -58.6 NC_001875.2 + 75650 0.76 0.275753
Target:  5'- cGUCGGCGaugGCGuuGGCGUCGGCGUCGGc -3'
miRNA:   3'- -CGGCCGCg--CGU--UUGCGGCCGCAGUUc -5'
6804 5' -58.6 NC_001875.2 + 75566 0.76 0.275753
Target:  5'- cGUCGGCguuggugauaGCGCuGGCGUCGGCGUCGGc -3'
miRNA:   3'- -CGGCCG----------CGCGuUUGCGGCCGCAGUUc -5'
6804 5' -58.6 NC_001875.2 + 124409 0.75 0.28223
Target:  5'- cGCCGGCGCGCAGuUGCCcuCGUCGu- -3'
miRNA:   3'- -CGGCCGCGCGUUuGCGGccGCAGUuc -5'
6804 5' -58.6 NC_001875.2 + 41806 0.75 0.295546
Target:  5'- cGCCGGCaCGC--GCGCCGGCGcCGc- -3'
miRNA:   3'- -CGGCCGcGCGuuUGCGGCCGCaGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.