miRNA display CGI


Results 21 - 40 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6804 5' -58.6 NC_001875.2 + 43483 0.66 0.786446
Target:  5'- cGCCGGCGUuuuuGUucGCGCuCGuaGUCAAa -3'
miRNA:   3'- -CGGCCGCG----CGuuUGCG-GCcgCAGUUc -5'
6804 5' -58.6 NC_001875.2 + 9715 0.66 0.786446
Target:  5'- cGCCGGcCGCGCc-GCGCCcgaaGCGUg--- -3'
miRNA:   3'- -CGGCC-GCGCGuuUGCGGc---CGCAguuc -5'
6804 5' -58.6 NC_001875.2 + 63281 0.66 0.786446
Target:  5'- -gCGGUGCGCGAcCGCCgccgccgcGGCGgCAAa -3'
miRNA:   3'- cgGCCGCGCGUUuGCGG--------CCGCaGUUc -5'
6804 5' -58.6 NC_001875.2 + 99924 0.66 0.786446
Target:  5'- gGCCGcGCGCGCGGugcaGCgCGGC--CAAGu -3'
miRNA:   3'- -CGGC-CGCGCGUUug--CG-GCCGcaGUUC- -5'
6804 5' -58.6 NC_001875.2 + 114194 0.66 0.786446
Target:  5'- cGCCaGCGCGCGAuuGCGCaaguugGGCGg---- -3'
miRNA:   3'- -CGGcCGCGCGUU--UGCGg-----CCGCaguuc -5'
6804 5' -58.6 NC_001875.2 + 44952 0.66 0.783723
Target:  5'- cGCCGGCGCGUuucuGAuagugcugcagcacCGUCGaCGUCAGc -3'
miRNA:   3'- -CGGCCGCGCGu---UU--------------GCGGCcGCAGUUc -5'
6804 5' -58.6 NC_001875.2 + 75585 0.66 0.783723
Target:  5'- --gGGCG-GCAAaguacugcagccgcGCGCCGGCGUguaCGAGu -3'
miRNA:   3'- cggCCGCgCGUU--------------UGCGGCCGCA---GUUC- -5'
6804 5' -58.6 NC_001875.2 + 36417 0.66 0.780988
Target:  5'- aCgGGCGcCGCGaggccuuaccuuugcGACGCCGGCG-CGc- -3'
miRNA:   3'- cGgCCGC-GCGU---------------UUGCGGCCGCaGUuc -5'
6804 5' -58.6 NC_001875.2 + 75474 0.66 0.777324
Target:  5'- cGCCGGUuugacaacGgGCAugucGCGCCuGCGUCGcAGg -3'
miRNA:   3'- -CGGCCG--------CgCGUu---UGCGGcCGCAGU-UC- -5'
6804 5' -58.6 NC_001875.2 + 63204 0.66 0.777324
Target:  5'- uGCgGGCaGCGCAGcuuuACGUCGcccGCGUCGc- -3'
miRNA:   3'- -CGgCCG-CGCGUU----UGCGGC---CGCAGUuc -5'
6804 5' -58.6 NC_001875.2 + 59611 0.66 0.777324
Target:  5'- aCgGGCGCuuuggcggauugGCGGACGCC-GCGUCGc- -3'
miRNA:   3'- cGgCCGCG------------CGUUUGCGGcCGCAGUuc -5'
6804 5' -58.6 NC_001875.2 + 48392 0.66 0.777324
Target:  5'- -gCGGCGa-CAggUGCCGGC-UCGGGa -3'
miRNA:   3'- cgGCCGCgcGUuuGCGGCCGcAGUUC- -5'
6804 5' -58.6 NC_001875.2 + 95306 0.66 0.777324
Target:  5'- -aCGGUGCGCGccAGCGCCguuuGGCGaaacaUCAAu -3'
miRNA:   3'- cgGCCGCGCGU--UUGCGG----CCGC-----AGUUc -5'
6804 5' -58.6 NC_001875.2 + 98199 0.66 0.777324
Target:  5'- aCUGGCGCGaAAACGaCGuCGUCGAGu -3'
miRNA:   3'- cGGCCGCGCgUUUGCgGCcGCAGUUC- -5'
6804 5' -58.6 NC_001875.2 + 88885 0.66 0.777324
Target:  5'- uGuuGGCGCGCu-GCGCgGGCu----- -3'
miRNA:   3'- -CggCCGCGCGuuUGCGgCCGcaguuc -5'
6804 5' -58.6 NC_001875.2 + 36716 0.66 0.777324
Target:  5'- gGCCguGGCGCGCuccacAACGguuaGGCGcUCGAGg -3'
miRNA:   3'- -CGG--CCGCGCGu----UUGCgg--CCGC-AGUUC- -5'
6804 5' -58.6 NC_001875.2 + 70859 0.66 0.777324
Target:  5'- -gCGGUGCGCcAGCGCCGaccCGcuuUCGAGa -3'
miRNA:   3'- cgGCCGCGCGuUUGCGGCc--GC---AGUUC- -5'
6804 5' -58.6 NC_001875.2 + 22584 0.66 0.777324
Target:  5'- gGCgCGGCGCGUuGGCcgGCCGGCuGUaCGGu -3'
miRNA:   3'- -CG-GCCGCGCGuUUG--CGGCCG-CA-GUUc -5'
6804 5' -58.6 NC_001875.2 + 95948 0.66 0.777324
Target:  5'- cGCUGGaGCugGCAAcGCGCCGGC-UCAAu -3'
miRNA:   3'- -CGGCCgCG--CGUU-UGCGGCCGcAGUUc -5'
6804 5' -58.6 NC_001875.2 + 124978 0.66 0.776405
Target:  5'- cGUCGcCGCGCGucCGCUuuacgugcaaguuGGCGUCGGGc -3'
miRNA:   3'- -CGGCcGCGCGUuuGCGG-------------CCGCAGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.