miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6805 3' -52.1 NC_001875.2 + 48226 0.66 0.983925
Target:  5'- cCCGGAGCGcGUCAAuugcugcaaguUGaGCUaCGGCGGc -3'
miRNA:   3'- cGGUUUCGU-CAGUU-----------ACcUGA-GCCGCC- -5'
6805 3' -52.1 NC_001875.2 + 63246 0.66 0.983925
Target:  5'- -aCAAAcGC-GUC---GGGCUCGGCGGc -3'
miRNA:   3'- cgGUUU-CGuCAGuuaCCUGAGCCGCC- -5'
6805 3' -52.1 NC_001875.2 + 111770 0.66 0.983925
Target:  5'- cGCCGAcgacuGguGUCGcUGGugaCGGCGGu -3'
miRNA:   3'- -CGGUUu----CguCAGUuACCugaGCCGCC- -5'
6805 3' -52.1 NC_001875.2 + 90636 0.66 0.983925
Target:  5'- cGCCAcaaauugcucAAGCugguccccGUCGGUGGGCgUGGCGu -3'
miRNA:   3'- -CGGU----------UUCGu-------CAGUUACCUGaGCCGCc -5'
6805 3' -52.1 NC_001875.2 + 84430 0.66 0.981934
Target:  5'- uGCCAucGGCGGaUCGGgagcGGCggCGGCGGu -3'
miRNA:   3'- -CGGUu-UCGUC-AGUUac--CUGa-GCCGCC- -5'
6805 3' -52.1 NC_001875.2 + 100154 0.66 0.981934
Target:  5'- cGCUGucGCGGUgaucaCGGUGGGCgCGaGCGGc -3'
miRNA:   3'- -CGGUuuCGUCA-----GUUACCUGaGC-CGCC- -5'
6805 3' -52.1 NC_001875.2 + 113305 0.66 0.981088
Target:  5'- cGCCc-AGCAG-CAcguacaccagcaugGUGGGCUuuucgugCGGCGGg -3'
miRNA:   3'- -CGGuuUCGUCaGU--------------UACCUGA-------GCCGCC- -5'
6805 3' -52.1 NC_001875.2 + 64728 0.66 0.979763
Target:  5'- gGCCAAGGCGGgCGacGUGGGCgaaGCGa -3'
miRNA:   3'- -CGGUUUCGUCaGU--UACCUGagcCGCc -5'
6805 3' -52.1 NC_001875.2 + 75962 0.66 0.979763
Target:  5'- gGCCAucGGCacAGUCGAgGGGCUCaGCa- -3'
miRNA:   3'- -CGGUu-UCG--UCAGUUaCCUGAGcCGcc -5'
6805 3' -52.1 NC_001875.2 + 125732 0.66 0.979536
Target:  5'- aGCCAaauugacGAGCAGUguuuGUGGGCggcuauuaCGGCGa -3'
miRNA:   3'- -CGGU-------UUCGUCAgu--UACCUGa-------GCCGCc -5'
6805 3' -52.1 NC_001875.2 + 53993 0.66 0.977404
Target:  5'- uGCCGcAGCuGGUCGcgcacGGcCUUGGCGGc -3'
miRNA:   3'- -CGGUuUCG-UCAGUua---CCuGAGCCGCC- -5'
6805 3' -52.1 NC_001875.2 + 113592 0.66 0.974849
Target:  5'- gGCCAGcacGGCguucgAGUCGGcggcGGGCcgCGGCGGc -3'
miRNA:   3'- -CGGUU---UCG-----UCAGUUa---CCUGa-GCCGCC- -5'
6805 3' -52.1 NC_001875.2 + 105885 0.66 0.972088
Target:  5'- aGUCGGuGCAGUaccCGAUGGcggGCgCGGCGGc -3'
miRNA:   3'- -CGGUUuCGUCA---GUUACC---UGaGCCGCC- -5'
6805 3' -52.1 NC_001875.2 + 6983 0.67 0.965595
Target:  5'- gGCgCAAAGCGGcCGGUGugggugugcugcuGGC-CGGCGGc -3'
miRNA:   3'- -CG-GUUUCGUCaGUUAC-------------CUGaGCCGCC- -5'
6805 3' -52.1 NC_001875.2 + 80849 0.67 0.958863
Target:  5'- aCCAcauGGUGGUCAAgcugaGcGACUCGGCGc -3'
miRNA:   3'- cGGUu--UCGUCAGUUa----C-CUGAGCCGCc -5'
6805 3' -52.1 NC_001875.2 + 130975 0.67 0.958863
Target:  5'- cCCAAAGUGGUCAAcGGAagaUUUGGCa- -3'
miRNA:   3'- cGGUUUCGUCAGUUaCCU---GAGCCGcc -5'
6805 3' -52.1 NC_001875.2 + 81469 0.67 0.958863
Target:  5'- cGCUGGuccGCGGUCAGUGG-CgCGcGCGGc -3'
miRNA:   3'- -CGGUUu--CGUCAGUUACCuGaGC-CGCC- -5'
6805 3' -52.1 NC_001875.2 + 14508 0.67 0.958863
Target:  5'- cGCUuauuccGCuGUCGggGGaACUUGGCGGg -3'
miRNA:   3'- -CGGuuu---CGuCAGUuaCC-UGAGCCGCC- -5'
6805 3' -52.1 NC_001875.2 + 58369 0.68 0.941867
Target:  5'- cGUCGGAcGC-GUCGGUGGACgaCGGCuGGu -3'
miRNA:   3'- -CGGUUU-CGuCAGUUACCUGa-GCCG-CC- -5'
6805 3' -52.1 NC_001875.2 + 18335 0.68 0.936998
Target:  5'- cGCCGAcuuugcAGCAGcUCGgcAUGGACgccaaCGGCGu -3'
miRNA:   3'- -CGGUU------UCGUC-AGU--UACCUGa----GCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.