miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6805 5' -62.6 NC_001875.2 + 60210 0.65 0.649968
Target:  5'- cGCCGGCGGCagauugaagcggCCGagCUCGCGCuugauguccGCCa -3'
miRNA:   3'- cCGGCUGCCGca----------GGUg-GAGCGCG---------CGG- -5'
6805 5' -62.6 NC_001875.2 + 75263 0.66 0.644137
Target:  5'- cGGCgauggCGGCGGCGUCgGCgaUG-GCGUCg -3'
miRNA:   3'- -CCG-----GCUGCCGCAGgUGgaGCgCGCGG- -5'
6805 5' -62.6 NC_001875.2 + 31037 0.66 0.644137
Target:  5'- cGGCCGAccCGGCG-CgGCCguaCGUcggacaacuGUGCCg -3'
miRNA:   3'- -CCGGCU--GCCGCaGgUGGa--GCG---------CGCGG- -5'
6805 5' -62.6 NC_001875.2 + 69638 0.66 0.644137
Target:  5'- aGGUgGACGcCGUCgGCCUCaGCcCGCUc -3'
miRNA:   3'- -CCGgCUGCcGCAGgUGGAG-CGcGCGG- -5'
6805 5' -62.6 NC_001875.2 + 89924 0.66 0.644137
Target:  5'- aGGgCGGC-GCGUCCGCgggccacuaUUCGCGgGCa -3'
miRNA:   3'- -CCgGCUGcCGCAGGUG---------GAGCGCgCGg -5'
6805 5' -62.6 NC_001875.2 + 21557 0.66 0.644137
Target:  5'- cGG-CGACGGgG-CaGCC-CGCGCGCUc -3'
miRNA:   3'- -CCgGCUGCCgCaGgUGGaGCGCGCGG- -5'
6805 5' -62.6 NC_001875.2 + 32246 0.66 0.644137
Target:  5'- cGGCaaauuGGCuGCGcgCCGCCUuuuauaCGCGCGCg -3'
miRNA:   3'- -CCGg----CUGcCGCa-GGUGGA------GCGCGCGg -5'
6805 5' -62.6 NC_001875.2 + 41275 0.66 0.644137
Target:  5'- gGGCCacuCGGaCG-CC-CUUCGCGCGUa -3'
miRNA:   3'- -CCGGcu-GCC-GCaGGuGGAGCGCGCGg -5'
6805 5' -62.6 NC_001875.2 + 42458 0.66 0.64122
Target:  5'- cGGCCGcuGCGGCGagCCACgcagcaacacgcgcaCGCGCacGCCg -3'
miRNA:   3'- -CCGGC--UGCCGCa-GGUGga-------------GCGCG--CGG- -5'
6805 5' -62.6 NC_001875.2 + 102870 0.66 0.634412
Target:  5'- gGGCa-GCGGCacuuuGUCCACCggaaagcCGCG-GCCg -3'
miRNA:   3'- -CCGgcUGCCG-----CAGGUGGa------GCGCgCGG- -5'
6805 5' -62.6 NC_001875.2 + 67941 0.66 0.634412
Target:  5'- --gCGGCGGCG-CCACg--GCGCGCUu -3'
miRNA:   3'- ccgGCUGCCGCaGGUGgagCGCGCGG- -5'
6805 5' -62.6 NC_001875.2 + 65336 0.66 0.634412
Target:  5'- uGCCGGCGGCGg-CACCUauuacuacuaCGUGCUc -3'
miRNA:   3'- cCGGCUGCCGCagGUGGAgc--------GCGCGG- -5'
6805 5' -62.6 NC_001875.2 + 67115 0.66 0.634412
Target:  5'- cGCCcACGuCGcCCGCCUUGgccaGCGCCg -3'
miRNA:   3'- cCGGcUGCcGCaGGUGGAGCg---CGCGG- -5'
6805 5' -62.6 NC_001875.2 + 47425 0.66 0.634412
Target:  5'- cGCCGAUGGC----ACCUauaCGCGcCGCCg -3'
miRNA:   3'- cCGGCUGCCGcaggUGGA---GCGC-GCGG- -5'
6805 5' -62.6 NC_001875.2 + 62471 0.66 0.634412
Target:  5'- cGGUgGACGGCG-CgCAgCgggCGCaCGCCg -3'
miRNA:   3'- -CCGgCUGCCGCaG-GUgGa--GCGcGCGG- -5'
6805 5' -62.6 NC_001875.2 + 12761 0.66 0.634412
Target:  5'- uGGgUGGCGGUuguuGUCCAgCCg-GgGCGCCg -3'
miRNA:   3'- -CCgGCUGCCG----CAGGU-GGagCgCGCGG- -5'
6805 5' -62.6 NC_001875.2 + 88228 0.66 0.634412
Target:  5'- gGGCaaaaACGGCGcaaGCggCGCGCGCCg -3'
miRNA:   3'- -CCGgc--UGCCGCaggUGgaGCGCGCGG- -5'
6805 5' -62.6 NC_001875.2 + 113492 0.66 0.631495
Target:  5'- cGCCGuuGGCGUCCauGCCgagcugcugcaaagUCG-GCGCUu -3'
miRNA:   3'- cCGGCugCCGCAGG--UGG--------------AGCgCGCGG- -5'
6805 5' -62.6 NC_001875.2 + 98000 0.66 0.631495
Target:  5'- uGCgCGACguguuguuugacgaGGCGUUUuucCCcCGCGCGCCg -3'
miRNA:   3'- cCG-GCUG--------------CCGCAGGu--GGaGCGCGCGG- -5'
6805 5' -62.6 NC_001875.2 + 113354 0.66 0.624687
Target:  5'- gGGCgCGGCuGCGUCgCugCggCGCgGCGCa -3'
miRNA:   3'- -CCG-GCUGcCGCAG-GugGa-GCG-CGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.