miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6806 3' -45.4 NC_001875.2 + 72346 0.66 0.99998
Target:  5'- --cAAUUGC-UGUG--UCGCGUCCGc -3'
miRNA:   3'- guuUUAACGaACAUuaGGCGCAGGCu -5'
6806 3' -45.4 NC_001875.2 + 91768 0.66 0.999962
Target:  5'- gAAAGUUGCguuuuucgAcauacaacacGUCCGCGUCCGu -3'
miRNA:   3'- gUUUUAACGaaca----U----------UAGGCGCAGGCu -5'
6806 3' -45.4 NC_001875.2 + 28959 0.66 0.999948
Target:  5'- uCAAug-UGCgguucGUuGUCCGCGUCgCGAa -3'
miRNA:   3'- -GUUuuaACGaa---CAuUAGGCGCAG-GCU- -5'
6806 3' -45.4 NC_001875.2 + 37123 0.67 0.999908
Target:  5'- -cGAGUUGUUUGcGA-CCGCGUuuGGc -3'
miRNA:   3'- guUUUAACGAACaUUaGGCGCAggCU- -5'
6806 3' -45.4 NC_001875.2 + 125430 0.68 0.999733
Target:  5'- gAAGAUggGCUUGcuguacaaaaaGAUCCGCGUgCCGGg -3'
miRNA:   3'- gUUUUAa-CGAACa----------UUAGGCGCA-GGCU- -5'
6806 3' -45.4 NC_001875.2 + 33435 0.68 0.999567
Target:  5'- ------cGCUUGaaacacaacGUCCGCGUCCGc -3'
miRNA:   3'- guuuuaaCGAACau-------UAGGCGCAGGCu -5'
6806 3' -45.4 NC_001875.2 + 88440 0.68 0.999567
Target:  5'- gCAAAucUGCUUGUcgcCCGUGUCCu- -3'
miRNA:   3'- -GUUUuaACGAACAuuaGGCGCAGGcu -5'
6806 3' -45.4 NC_001875.2 + 68888 0.69 0.999317
Target:  5'- ------cGUUUG-AcgCCGCGUCCGGc -3'
miRNA:   3'- guuuuaaCGAACaUuaGGCGCAGGCU- -5'
6806 3' -45.4 NC_001875.2 + 85851 0.69 0.99915
Target:  5'- ---cGUUGU-UGUGGUgCGCGUCCGu -3'
miRNA:   3'- guuuUAACGaACAUUAgGCGCAGGCu -5'
6806 3' -45.4 NC_001875.2 + 130704 0.72 0.990192
Target:  5'- ----cUUGCaUGUAcgCCGUGUCCGc -3'
miRNA:   3'- guuuuAACGaACAUuaGGCGCAGGCu -5'
6806 3' -45.4 NC_001875.2 + 29352 0.76 0.919662
Target:  5'- ------cGCUUGUGGUCCGUuUCCGGg -3'
miRNA:   3'- guuuuaaCGAACAUUAGGCGcAGGCU- -5'
6806 3' -45.4 NC_001875.2 + 62016 1.1 0.023349
Target:  5'- gCAAAAUUGCUUGUAAUCCGCGUCCGAu -3'
miRNA:   3'- -GUUUUAACGAACAUUAGGCGCAGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.