miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6806 5' -44.4 NC_001875.2 + 130771 0.65 0.999997
Target:  5'- --gCGUCGCGAucucguaAACACAgUUGAguGAGCu -3'
miRNA:   3'- uuaGCAGCGCU-------UUGUGUgAGUU--UUUG- -5'
6806 5' -44.4 NC_001875.2 + 1177 0.66 0.999994
Target:  5'- cGUCGUCGCGGcacuuugcCACGCUgAAccGCa -3'
miRNA:   3'- uUAGCAGCGCUuu------GUGUGAgUUuuUG- -5'
6806 5' -44.4 NC_001875.2 + 41061 0.66 0.999994
Target:  5'- uGUCGUU-CGAGGCGCagcgGCUCAAcAACa -3'
miRNA:   3'- uUAGCAGcGCUUUGUG----UGAGUUuUUG- -5'
6806 5' -44.4 NC_001875.2 + 93564 0.66 0.999991
Target:  5'- cGUCGUCGUac-GCGCGCUgcGAGGCg -3'
miRNA:   3'- uUAGCAGCGcuuUGUGUGAguUUUUG- -5'
6806 5' -44.4 NC_001875.2 + 59905 0.66 0.999991
Target:  5'- --gCG-CGCGGAGCGCGCggUCAAGGc- -3'
miRNA:   3'- uuaGCaGCGCUUUGUGUG--AGUUUUug -5'
6806 5' -44.4 NC_001875.2 + 33565 0.66 0.999991
Target:  5'- cGGUCGcCGCGggGCACcauGCcCGAGucGGCg -3'
miRNA:   3'- -UUAGCaGCGCuuUGUG---UGaGUUU--UUG- -5'
6806 5' -44.4 NC_001875.2 + 79489 0.66 0.999991
Target:  5'- aAAUCG-CGCagcaacaauucGAGGCGCGC-CGAAAACu -3'
miRNA:   3'- -UUAGCaGCG-----------CUUUGUGUGaGUUUUUG- -5'
6806 5' -44.4 NC_001875.2 + 50781 0.66 0.999991
Target:  5'- -cUCGUCGCG--GCGCAC-CAuu-ACg -3'
miRNA:   3'- uuAGCAGCGCuuUGUGUGaGUuuuUG- -5'
6806 5' -44.4 NC_001875.2 + 66935 0.66 0.999991
Target:  5'- cGUCGUCGCucugcGCGCGCUUGAuuAUg -3'
miRNA:   3'- uUAGCAGCGcuu--UGUGUGAGUUuuUG- -5'
6806 5' -44.4 NC_001875.2 + 95920 0.66 0.999987
Target:  5'- -----aCGCG-GGCAUGCUCGAGGACa -3'
miRNA:   3'- uuagcaGCGCuUUGUGUGAGUUUUUG- -5'
6806 5' -44.4 NC_001875.2 + 115312 0.67 0.999982
Target:  5'- --aCGUgGCGgcGCAUuuUCGAGAACa -3'
miRNA:   3'- uuaGCAgCGCuuUGUGugAGUUUUUG- -5'
6806 5' -44.4 NC_001875.2 + 46531 0.67 0.999975
Target:  5'- cAAUCGUuuuacCGUGAAACccuACAuuCUCAAAAACu -3'
miRNA:   3'- -UUAGCA-----GCGCUUUG---UGU--GAGUUUUUG- -5'
6806 5' -44.4 NC_001875.2 + 46587 0.67 0.999966
Target:  5'- -cUCGUguccgcgccgagCGCGGAACccGCGCUCGucGACa -3'
miRNA:   3'- uuAGCA------------GCGCUUUG--UGUGAGUuuUUG- -5'
6806 5' -44.4 NC_001875.2 + 80902 0.67 0.999953
Target:  5'- aAGUCG-CGCGAGcgGCGC-CUgAAAAACc -3'
miRNA:   3'- -UUAGCaGCGCUU--UGUGuGAgUUUUUG- -5'
6806 5' -44.4 NC_001875.2 + 42732 0.67 0.999953
Target:  5'- cGGUCGUCGCGcgcggcGACGCGCaugguGAGCg -3'
miRNA:   3'- -UUAGCAGCGCu-----UUGUGUGaguu-UUUG- -5'
6806 5' -44.4 NC_001875.2 + 105561 0.67 0.999953
Target:  5'- uGUCGUCGU----CGCACUCAAGGcGCg -3'
miRNA:   3'- uUAGCAGCGcuuuGUGUGAGUUUU-UG- -5'
6806 5' -44.4 NC_001875.2 + 130025 0.68 0.999943
Target:  5'- gGGUCGUUGCuGAcgcaccgcuaaaaauAGCACGCgccguUCGAGAGCg -3'
miRNA:   3'- -UUAGCAGCG-CU---------------UUGUGUG-----AGUUUUUG- -5'
6806 5' -44.4 NC_001875.2 + 113277 0.68 0.999936
Target:  5'- --aCGaCGCaAAGCGCGCUCAAGAc- -3'
miRNA:   3'- uuaGCaGCGcUUUGUGUGAGUUUUug -5'
6806 5' -44.4 NC_001875.2 + 80279 0.68 0.999936
Target:  5'- --gCGUCGUGAAcggcuCGCACUUGAcGAGCg -3'
miRNA:   3'- uuaGCAGCGCUUu----GUGUGAGUU-UUUG- -5'
6806 5' -44.4 NC_001875.2 + 18509 0.68 0.999912
Target:  5'- cAAUCGUCGCcucguuccuugaaGAGuACGCGCUCGuguuuGGCa -3'
miRNA:   3'- -UUAGCAGCG-------------CUU-UGUGUGAGUuu---UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.