miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6806 5' -44.4 NC_001875.2 + 130025 0.68 0.999943
Target:  5'- gGGUCGUUGCuGAcgcaccgcuaaaaauAGCACGCgccguUCGAGAGCg -3'
miRNA:   3'- -UUAGCAGCG-CU---------------UUGUGUG-----AGUUUUUG- -5'
6806 5' -44.4 NC_001875.2 + 57718 0.7 0.999338
Target:  5'- cGUCGUCGCGcGACAC-CgCAAAGucGCg -3'
miRNA:   3'- uUAGCAGCGCuUUGUGuGaGUUUU--UG- -5'
6806 5' -44.4 NC_001875.2 + 63884 0.69 0.999585
Target:  5'- cGGUUGUUGCGAAaaGCGCGCgCAAGGu- -3'
miRNA:   3'- -UUAGCAGCGCUU--UGUGUGaGUUUUug -5'
6806 5' -44.4 NC_001875.2 + 6537 0.69 0.999585
Target:  5'- -cUCGUCGCuGGucACAUACUCGAAc-- -3'
miRNA:   3'- uuAGCAGCG-CUu-UGUGUGAGUUUuug -5'
6806 5' -44.4 NC_001875.2 + 28980 0.69 0.999674
Target:  5'- --gCGUCGCGAAccacACACGcCUCAGu--- -3'
miRNA:   3'- uuaGCAGCGCUU----UGUGU-GAGUUuuug -5'
6806 5' -44.4 NC_001875.2 + 73137 0.69 0.999747
Target:  5'- --gCGUCGCGcuguACACGCUCuccacAACg -3'
miRNA:   3'- uuaGCAGCGCuu--UGUGUGAGuuu--UUG- -5'
6806 5' -44.4 NC_001875.2 + 57754 0.68 0.999805
Target:  5'- ---aGUCGCGAAACGC-CUCcu--GCa -3'
miRNA:   3'- uuagCAGCGCUUUGUGuGAGuuuuUG- -5'
6806 5' -44.4 NC_001875.2 + 21655 0.68 0.999846
Target:  5'- uGUCGUCuugcaacgacaagGCGGAggccaagcGCGCACUCAAAAc- -3'
miRNA:   3'- uUAGCAG-------------CGCUU--------UGUGUGAGUUUUug -5'
6806 5' -44.4 NC_001875.2 + 80279 0.68 0.999936
Target:  5'- --gCGUCGUGAAcggcuCGCACUUGAcGAGCg -3'
miRNA:   3'- uuaGCAGCGCUUu----GUGUGAGUU-UUUG- -5'
6806 5' -44.4 NC_001875.2 + 33165 0.7 0.998975
Target:  5'- --gCGUCGCGcuGC-CGCUCGAGGcACa -3'
miRNA:   3'- uuaGCAGCGCuuUGuGUGAGUUUU-UG- -5'
6806 5' -44.4 NC_001875.2 + 33625 0.7 0.998737
Target:  5'- --gCGUCGCGu-GCACaaACUCGAcGACg -3'
miRNA:   3'- uuaGCAGCGCuuUGUG--UGAGUUuUUG- -5'
6806 5' -44.4 NC_001875.2 + 80609 0.71 0.997261
Target:  5'- uGGUCGUcacggugggcgCGCGGAacGCGCGCUCGAcGGGCg -3'
miRNA:   3'- -UUAGCA-----------GCGCUU--UGUGUGAGUU-UUUG- -5'
6806 5' -44.4 NC_001875.2 + 112963 0.77 0.917023
Target:  5'- aAAUCGUCGgGAAACuCGCgCGGAAACa -3'
miRNA:   3'- -UUAGCAGCgCUUUGuGUGaGUUUUUG- -5'
6806 5' -44.4 NC_001875.2 + 82950 0.74 0.983024
Target:  5'- cGGUCGUCGCGGcgGGCGCGucCUCGGcGACc -3'
miRNA:   3'- -UUAGCAGCGCU--UUGUGU--GAGUUuUUG- -5'
6806 5' -44.4 NC_001875.2 + 36880 0.72 0.992583
Target:  5'- cGUCGUgCGCGcgGCACACcgccggCAGGAACu -3'
miRNA:   3'- uUAGCA-GCGCuuUGUGUGa-----GUUUUUG- -5'
6806 5' -44.4 NC_001875.2 + 130151 0.72 0.994025
Target:  5'- gGGUCGUCGCuGAcgcaccgcuaaaaauAGCACGCgccguUCGAGAGCg -3'
miRNA:   3'- -UUAGCAGCG-CU---------------UUGUGUG-----AGUUUUUG- -5'
6806 5' -44.4 NC_001875.2 + 130217 0.72 0.994025
Target:  5'- gGGUCGUCGCuGAcgcaccgcuaaaaauAGCACGCgccguUCGAGAGCg -3'
miRNA:   3'- -UUAGCAGCG-CU---------------UUGUGUG-----AGUUUUUG- -5'
6806 5' -44.4 NC_001875.2 + 130283 0.72 0.994025
Target:  5'- gGGUCGUCGCuGAcgcaccgcuaaaaauAGCACGCgccguUCGAGAGCg -3'
miRNA:   3'- -UUAGCAGCG-CU---------------UUGUGUG-----AGUUUUUG- -5'
6806 5' -44.4 NC_001875.2 + 130349 0.72 0.994025
Target:  5'- gGGUCGUCGCuGAcgcaccgcuaaaaguAGCACGCgccuuUCGAGAGCg -3'
miRNA:   3'- -UUAGCAGCG-CU---------------UUGUGUG-----AGUUUUUG- -5'
6806 5' -44.4 NC_001875.2 + 11364 0.72 0.995388
Target:  5'- -uUUGUCGUGAAuCACugUCAAuAAACu -3'
miRNA:   3'- uuAGCAGCGCUUuGUGugAGUU-UUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.