miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6808 3' -53.5 NC_001875.2 + 61621 0.66 0.954128
Target:  5'- gGGCUGUGucGGCGgcGCCUcGGGcGCCCAGu -3'
miRNA:   3'- -CCGGCAU--UUGU--UGGA-CCUcCGGGUUc -5'
6808 3' -53.5 NC_001875.2 + 39919 0.66 0.954128
Target:  5'- -aCCGUAcGCcGCCaUGGAGuGCCCGu- -3'
miRNA:   3'- ccGGCAUuUGuUGG-ACCUC-CGGGUuc -5'
6808 3' -53.5 NC_001875.2 + 67705 0.66 0.949967
Target:  5'- uGGCCG---GCGGCCUgaGGGGGUUCGu- -3'
miRNA:   3'- -CCGGCauuUGUUGGA--CCUCCGGGUuc -5'
6808 3' -53.5 NC_001875.2 + 67590 0.66 0.949967
Target:  5'- cGGCCGcAAACGACCU----GCCCAGc -3'
miRNA:   3'- -CCGGCaUUUGUUGGAccucCGGGUUc -5'
6808 3' -53.5 NC_001875.2 + 37502 0.66 0.948671
Target:  5'- cGGCCGgcGacggugcggacgacGCGcccuGCCUGGAcGcGCCCAAc -3'
miRNA:   3'- -CCGGCauU--------------UGU----UGGACCU-C-CGGGUUc -5'
6808 3' -53.5 NC_001875.2 + 53930 0.66 0.945562
Target:  5'- gGGCgCGUuGGCGcgcacgauuCUUGGGGGCCCGc- -3'
miRNA:   3'- -CCG-GCAuUUGUu--------GGACCUCCGGGUuc -5'
6808 3' -53.5 NC_001875.2 + 62192 0.66 0.94091
Target:  5'- cGGCgGUGAGCGGgCU-GAGGCCg--- -3'
miRNA:   3'- -CCGgCAUUUGUUgGAcCUCCGGguuc -5'
6808 3' -53.5 NC_001875.2 + 26007 0.66 0.94091
Target:  5'- uGGCCGUcgGC-GCCUGGGcGGUCa--- -3'
miRNA:   3'- -CCGGCAuuUGuUGGACCU-CCGGguuc -5'
6808 3' -53.5 NC_001875.2 + 82528 0.67 0.936009
Target:  5'- cGGcCCGU--GCAACUgcaGGuGGCUCAGGu -3'
miRNA:   3'- -CC-GGCAuuUGUUGGa--CCuCCGGGUUC- -5'
6808 3' -53.5 NC_001875.2 + 23754 0.67 0.935505
Target:  5'- uGGCCGUGAgugcgguGCAGCCcgcaGAGcgcacguuGCCCAGGu -3'
miRNA:   3'- -CCGGCAUU-------UGUUGGac--CUC--------CGGGUUC- -5'
6808 3' -53.5 NC_001875.2 + 96295 0.67 0.930856
Target:  5'- cGUCGUAGGCGGCCgggUGGGcGGCCa--- -3'
miRNA:   3'- cCGGCAUUUGUUGG---ACCU-CCGGguuc -5'
6808 3' -53.5 NC_001875.2 + 128038 0.67 0.925452
Target:  5'- cGGCCGgugguCGACgCUGaGucGGGCCCAAc -3'
miRNA:   3'- -CCGGCauuu-GUUG-GAC-C--UCCGGGUUc -5'
6808 3' -53.5 NC_001875.2 + 41244 0.67 0.913886
Target:  5'- cGGCCGUcgcgugcuacAAACugAACgUGGAGGgCCAc- -3'
miRNA:   3'- -CCGGCA----------UUUG--UUGgACCUCCgGGUuc -5'
6808 3' -53.5 NC_001875.2 + 70195 0.68 0.907727
Target:  5'- cGGgCGgcGACGGCgaccaCUGGGcGCCCGAGg -3'
miRNA:   3'- -CCgGCauUUGUUG-----GACCUcCGGGUUC- -5'
6808 3' -53.5 NC_001875.2 + 23675 0.68 0.887773
Target:  5'- cGGuCCGUGugcACGACCaGGcugcGGCCCAAu -3'
miRNA:   3'- -CC-GGCAUu--UGUUGGaCCu---CCGGGUUc -5'
6808 3' -53.5 NC_001875.2 + 33662 0.68 0.887773
Target:  5'- cGCCGUcgGCGGCgUGGuaaaacaaacGGCCCGAc -3'
miRNA:   3'- cCGGCAuuUGUUGgACCu---------CCGGGUUc -5'
6808 3' -53.5 NC_001875.2 + 77452 0.68 0.88064
Target:  5'- aGCCGUuccACAA-CUGGcGGCCCGAc -3'
miRNA:   3'- cCGGCAuu-UGUUgGACCuCCGGGUUc -5'
6808 3' -53.5 NC_001875.2 + 67473 0.7 0.824524
Target:  5'- uGGCCGUGuuCAGCCUGGuGuaCgaCAAGa -3'
miRNA:   3'- -CCGGCAUuuGUUGGACCuCcgG--GUUC- -5'
6808 3' -53.5 NC_001875.2 + 117361 0.7 0.806713
Target:  5'- gGGCCGgcu--GGCCgucggGGAGGCgCCGAGc -3'
miRNA:   3'- -CCGGCauuugUUGGa----CCUCCG-GGUUC- -5'
6808 3' -53.5 NC_001875.2 + 1013 0.7 0.797554
Target:  5'- gGGcCCGUucuuGCAGCgCgugGcGGGGCCCGAGg -3'
miRNA:   3'- -CC-GGCAuu--UGUUG-Ga--C-CUCCGGGUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.