miRNA display CGI


Results 1 - 20 of 329 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6808 5' -67.7 NC_001875.2 + 93923 0.66 0.39951
Target:  5'- gCGCCuCGUccaACacgaCGCGGUGCcagugCCGCGCCa -3'
miRNA:   3'- -GCGG-GCG---UGg---GCGUCGCG-----GGCGCGGg -5'
6808 5' -67.7 NC_001875.2 + 16470 0.66 0.39951
Target:  5'- gGCUCGUACCCGUuGUcuggaaacgGCCUGgacgaGCCCa -3'
miRNA:   3'- gCGGGCGUGGGCGuCG---------CGGGCg----CGGG- -5'
6808 5' -67.7 NC_001875.2 + 63303 0.66 0.39951
Target:  5'- -cCCCGCGCuuGUgucguacaaauuGGCGUCgGUGCUCa -3'
miRNA:   3'- gcGGGCGUGggCG------------UCGCGGgCGCGGG- -5'
6808 5' -67.7 NC_001875.2 + 19427 0.66 0.39951
Target:  5'- aCGacuaCCGCAUUgUGCuGCGgCCGCGCCg -3'
miRNA:   3'- -GCg---GGCGUGG-GCGuCGCgGGCGCGGg -5'
6808 5' -67.7 NC_001875.2 + 43700 0.66 0.39951
Target:  5'- gCGCCCaCACaauuuuggcgCCGCucaGCaCCGUGCCCg -3'
miRNA:   3'- -GCGGGcGUG----------GGCGucgCG-GGCGCGGG- -5'
6808 5' -67.7 NC_001875.2 + 109875 0.66 0.39951
Target:  5'- aGCUgGCGCUgGCGcCGCCCauccccGCGCCg -3'
miRNA:   3'- gCGGgCGUGGgCGUcGCGGG------CGCGGg -5'
6808 5' -67.7 NC_001875.2 + 16382 0.66 0.39951
Target:  5'- gCGCCCGCuaGCUCaacgcgguagguGCGGUGUUCGuCGCCg -3'
miRNA:   3'- -GCGGGCG--UGGG------------CGUCGCGGGC-GCGGg -5'
6808 5' -67.7 NC_001875.2 + 114765 0.66 0.39951
Target:  5'- uGCCCGCcugaccagcuucACCagcggGCAGCuGCUCGCGUUg -3'
miRNA:   3'- gCGGGCG------------UGGg----CGUCG-CGGGCGCGGg -5'
6808 5' -67.7 NC_001875.2 + 88308 0.66 0.39951
Target:  5'- uGUCCGCA-CCGCGGuCGUCa-CGUCCa -3'
miRNA:   3'- gCGGGCGUgGGCGUC-GCGGgcGCGGG- -5'
6808 5' -67.7 NC_001875.2 + 125906 0.66 0.39951
Target:  5'- aGgCCGCGCCCaccugcGCGGCGCUacccaaCGCCa -3'
miRNA:   3'- gCgGGCGUGGG------CGUCGCGGgc----GCGGg -5'
6808 5' -67.7 NC_001875.2 + 25873 0.66 0.39951
Target:  5'- aGCCUGC-CCauuGCGGCGCCCaaggagaCGCUg -3'
miRNA:   3'- gCGGGCGuGGg--CGUCGCGGGc------GCGGg -5'
6808 5' -67.7 NC_001875.2 + 39222 0.66 0.39951
Target:  5'- aCGCgCGCAa--GC--CGCUCGCGCCCa -3'
miRNA:   3'- -GCGgGCGUgggCGucGCGGGCGCGGG- -5'
6808 5' -67.7 NC_001875.2 + 54807 0.66 0.398717
Target:  5'- aGCaCCGCGa-CGCGGCugccgaGCCCgaacaccucaaacGCGCCCg -3'
miRNA:   3'- gCG-GGCGUggGCGUCG------CGGG-------------CGCGGG- -5'
6808 5' -67.7 NC_001875.2 + 100291 0.66 0.398717
Target:  5'- gGCCCa-ACCUGCAGCGCgUGCaagugguGCCg -3'
miRNA:   3'- gCGGGcgUGGGCGUCGCGgGCG-------CGGg -5'
6808 5' -67.7 NC_001875.2 + 5802 0.66 0.398717
Target:  5'- cCGgCUGCGCauaagguaguagaCUGcCAGCGCCgccgaucuggaCGCGCCCg -3'
miRNA:   3'- -GCgGGCGUG-------------GGC-GUCGCGG-----------GCGCGGG- -5'
6808 5' -67.7 NC_001875.2 + 82995 0.66 0.397925
Target:  5'- cCGCUCGuCGCCggcgggcuugaaGCGGCGCCguaGCGCgCg -3'
miRNA:   3'- -GCGGGC-GUGGg-----------CGUCGCGGg--CGCGgG- -5'
6808 5' -67.7 NC_001875.2 + 40668 0.66 0.397135
Target:  5'- aCGCaaGCGCCgcuguggaccaugaCGCGGCGCauuuggaaccgCCGCGCgCg -3'
miRNA:   3'- -GCGggCGUGG--------------GCGUCGCG-----------GGCGCGgG- -5'
6808 5' -67.7 NC_001875.2 + 98224 0.66 0.391628
Target:  5'- uGCCCgGCGgCCGaCGGacugcuGCCCGUGUUCa -3'
miRNA:   3'- gCGGG-CGUgGGC-GUCg-----CGGGCGCGGG- -5'
6808 5' -67.7 NC_001875.2 + 40943 0.66 0.391628
Target:  5'- uGCCCGUcaacauGCCCgacGCGGC-CCCG-GCCa -3'
miRNA:   3'- gCGGGCG------UGGG---CGUCGcGGGCgCGGg -5'
6808 5' -67.7 NC_001875.2 + 61664 0.66 0.391628
Target:  5'- cCGCCCG-GCUCGCuGCGCCaaacccUGUCCg -3'
miRNA:   3'- -GCGGGCgUGGGCGuCGCGGgc----GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.