miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
681 5' -54.1 AC_000018.1 + 22419 0.66 0.609881
Target:  5'- cUGCUCCUGac-CUACUugGCGccCUGCAGc -3'
miRNA:   3'- -ACGAGGACauuGAUGA--CGCc-GACGUC- -5'
681 5' -54.1 AC_000018.1 + 25395 0.66 0.605227
Target:  5'- cGCUCCgGUAuccugccugccacCUGCUGUGcGCUGCc- -3'
miRNA:   3'- aCGAGGaCAUu------------GAUGACGC-CGACGuc -5'
681 5' -54.1 AC_000018.1 + 2917 0.66 0.598254
Target:  5'- aGUUUCUGUAGCUGC-GCaGUgGCGGa -3'
miRNA:   3'- aCGAGGACAUUGAUGaCGcCGaCGUC- -5'
681 5' -54.1 AC_000018.1 + 10925 0.68 0.474547
Target:  5'- cUGUUgUUGUAGCUGCUGCugagaagggGGCUGUu- -3'
miRNA:   3'- -ACGAgGACAUUGAUGACG---------CCGACGuc -5'
681 5' -54.1 AC_000018.1 + 11197 0.68 0.474547
Target:  5'- cUGUUgUUGUAGCUGCUGCugagaagggGGCUGUu- -3'
miRNA:   3'- -ACGAgGACAUUGAUGACG---------CCGACGuc -5'
681 5' -54.1 AC_000018.1 + 3718 0.7 0.364964
Target:  5'- gGCagCaGUAGCgGCgGCGGCUGCAGc -3'
miRNA:   3'- aCGagGaCAUUGaUGaCGCCGACGUC- -5'
681 5' -54.1 AC_000018.1 + 1854 0.76 0.14321
Target:  5'- -aCUCCUGguagAACUGCUGCuGCUGUAGc -3'
miRNA:   3'- acGAGGACa---UUGAUGACGcCGACGUC- -5'
681 5' -54.1 AC_000018.1 + 10908 1.08 0.000684
Target:  5'- cUGCUCCUGUAACUACUGCGGCUGCAGc -3'
miRNA:   3'- -ACGAGGACAUUGAUGACGCCGACGUC- -5'
681 5' -54.1 AC_000018.1 + 11179 1.08 0.000684
Target:  5'- cUGCUCCUGUAACUACUGCGGCUGCAGc -3'
miRNA:   3'- -ACGAGGACAUUGAUGACGCCGACGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.