miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6811	5'	-57.3	NC_001875.2	+	99355	0.66	0.801166
	Target:  5'- gCGCAacUUGGgcgcGCCCGCCAaguGGCCAAa -3' miRNA:   3'- -GCGUaaGACCa---CGGGUGGUc--UCGGUU- -5'
6811	5'	-57.3	NC_001875.2	+	7364	0.66	0.782609
	Target:  5'- uGCGgugcaGUGCCCGCCGGAucgGCCAc -3' miRNA:   3'- gCGUaagacCACGGGUGGUCU---CGGUu -5'
6811	5'	-57.3	NC_001875.2	+	39366	0.66	0.763489
	Target:  5'- cCGCcgUCUcGUGCCUACCcugcGGCCAc -3' miRNA:   3'- -GCGuaAGAcCACGGGUGGuc--UCGGUu -5'
6811	5'	-57.3	NC_001875.2	+	75513	0.66	0.763489
	Target:  5'- gCGCAUaccgCUGaaggauGUGCCCGCCAccGCCAu -3' miRNA:   3'- -GCGUAa---GAC------CACGGGUGGUcuCGGUu -5'
6811	5'	-57.3	NC_001875.2	+	121068	0.67	0.723868
	Target:  5'- uGCGUggauggaaUUGGUGUCgauGCCGGAGCCAAa -3' miRNA:   3'- gCGUAa-------GACCACGGg--UGGUCUCGGUU- -5'
6811	5'	-57.3	NC_001875.2	+	84359	0.68	0.693253
	Target:  5'- uGCAUUUUGGUcGCCCGaauGGGCCu- -3' miRNA:   3'- gCGUAAGACCA-CGGGUgguCUCGGuu -5'
6811	5'	-57.3	NC_001875.2	+	91231	0.68	0.651732
	Target:  5'- gCGCGUggUGGcGCCCACCAcGGcGCCGu -3' miRNA:   3'- -GCGUAagACCaCGGGUGGU-CU-CGGUu -5'
6811	5'	-57.3	NC_001875.2	+	58532	1.06	0.00241
	Target:  5'- gCGCAUUCUGGUGCCCACCAGAGCCAAc -3' miRNA:   3'- -GCGUAAGACCACGGGUGGUCUCGGUU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home