miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6812 3' -52.5 NC_001875.2 + 80644 0.66 0.977404
Target:  5'- aCGGgcgGCGCcaGAACCGCgcCGUCGUggGCAa -3'
miRNA:   3'- gGUUa--CGUG--UUUGGCGa-GCAGCG--CGU- -5'
6812 3' -52.5 NC_001875.2 + 89089 0.66 0.977404
Target:  5'- cCCGA-GCGC--GCCGCUCaccaugcgcGUCGcCGCGc -3'
miRNA:   3'- -GGUUaCGUGuuUGGCGAG---------CAGC-GCGU- -5'
6812 3' -52.5 NC_001875.2 + 3088 0.66 0.977404
Target:  5'- cCCAcggcGUGCACGcGCCggggcgcgGCUCG-CgGCGCAg -3'
miRNA:   3'- -GGU----UACGUGUuUGG--------CGAGCaG-CGCGU- -5'
6812 3' -52.5 NC_001875.2 + 90023 0.66 0.977404
Target:  5'- ----cGCGCAAcugGCCGCggCGccggCGCGCGu -3'
miRNA:   3'- gguuaCGUGUU---UGGCGa-GCa---GCGCGU- -5'
6812 3' -52.5 NC_001875.2 + 89050 0.66 0.977404
Target:  5'- gCCcGUGCGCGGGCUGgUCaaaauugUGCGCAc -3'
miRNA:   3'- -GGuUACGUGUUUGGCgAGca-----GCGCGU- -5'
6812 3' -52.5 NC_001875.2 + 39299 0.66 0.977404
Target:  5'- aCCAAgugcgcgcUGCACAccguGCCgGCggCGUgCGCGCGc -3'
miRNA:   3'- -GGUU--------ACGUGUu---UGG-CGa-GCA-GCGCGU- -5'
6812 3' -52.5 NC_001875.2 + 34169 0.66 0.977404
Target:  5'- ----gGCGCuuuguucguuGCCGUcggCGUCGCGCAu -3'
miRNA:   3'- gguuaCGUGuu--------UGGCGa--GCAGCGCGU- -5'
6812 3' -52.5 NC_001875.2 + 22637 0.66 0.977404
Target:  5'- gCAAUGCGucAACUGCUgGUauaaaaggCGCGCGu -3'
miRNA:   3'- gGUUACGUguUUGGCGAgCA--------GCGCGU- -5'
6812 3' -52.5 NC_001875.2 + 17313 0.66 0.977404
Target:  5'- gCCGAUGUuaaaGAGCUGCUggcgguugcgcCGcCGCGCGa -3'
miRNA:   3'- -GGUUACGug--UUUGGCGA-----------GCaGCGCGU- -5'
6812 3' -52.5 NC_001875.2 + 45964 0.66 0.977157
Target:  5'- gCGAUaGCGCAGAgCCGCcgcugcggcgaacUCGcCGUGCAc -3'
miRNA:   3'- gGUUA-CGUGUUU-GGCG-------------AGCaGCGCGU- -5'
6812 3' -52.5 NC_001875.2 + 31680 0.66 0.974848
Target:  5'- gCCAgcGUGC-CGGcguggaccGCCGCUUG-CGCGCc -3'
miRNA:   3'- -GGU--UACGuGUU--------UGGCGAGCaGCGCGu -5'
6812 3' -52.5 NC_001875.2 + 82361 0.66 0.974848
Target:  5'- -uGAUGUGCAAACuCGggCG-CGCGCGg -3'
miRNA:   3'- ggUUACGUGUUUG-GCgaGCaGCGCGU- -5'
6812 3' -52.5 NC_001875.2 + 71701 0.66 0.974848
Target:  5'- -uGGUGCACGAcggacaacugggACCGCUgCGgcaGCGUAa -3'
miRNA:   3'- ggUUACGUGUU------------UGGCGA-GCag-CGCGU- -5'
6812 3' -52.5 NC_001875.2 + 121246 0.66 0.974042
Target:  5'- aCAggGUGCAAauuaagcagcagcaGCUGCacgUUGUCGCGCAg -3'
miRNA:   3'- gGUuaCGUGUU--------------UGGCG---AGCAGCGCGU- -5'
6812 3' -52.5 NC_001875.2 + 111899 0.66 0.972088
Target:  5'- aCC-GUGCGCGccGGCCGCUC--CGUGUAc -3'
miRNA:   3'- -GGuUACGUGU--UUGGCGAGcaGCGCGU- -5'
6812 3' -52.5 NC_001875.2 + 112713 0.66 0.972088
Target:  5'- -gAcgGCGCc-GCCGUgguaggcgCGUCGCGCGc -3'
miRNA:   3'- ggUuaCGUGuuUGGCGa-------GCAGCGCGU- -5'
6812 3' -52.5 NC_001875.2 + 4675 0.66 0.972088
Target:  5'- aCUAAUucCACAAugCGCUCGg-GCGCc -3'
miRNA:   3'- -GGUUAc-GUGUUugGCGAGCagCGCGu -5'
6812 3' -52.5 NC_001875.2 + 79887 0.66 0.972088
Target:  5'- ----cGCGCGuGCgGCaCGUCGCGCc -3'
miRNA:   3'- gguuaCGUGUuUGgCGaGCAGCGCGu -5'
6812 3' -52.5 NC_001875.2 + 100248 0.66 0.971219
Target:  5'- cCCAcgGCACGGcGCCGgacaccacccuuaaCUCGugcacgcgaccuUCGCGCAa -3'
miRNA:   3'- -GGUuaCGUGUU-UGGC--------------GAGC------------AGCGCGU- -5'
6812 3' -52.5 NC_001875.2 + 53116 0.66 0.970331
Target:  5'- aUAGUGCGCcgucgaaaacuuuGCCGCcuaUUGUUGCGCGg -3'
miRNA:   3'- gGUUACGUGuu-----------UGGCG---AGCAGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.