miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6812 5' -61.3 NC_001875.2 + 100137 0.66 0.654454
Target:  5'- aGUaauGCGCcGGCgGCGCgcaagCGGCGGUc -3'
miRNA:   3'- aCG---UGCGaCUGgCGCGaca--GCCGCCA- -5'
6812 5' -61.3 NC_001875.2 + 100030 0.66 0.654454
Target:  5'- cGCgGCGCUuGCCGCGUUcGUCGuGcCGGa -3'
miRNA:   3'- aCG-UGCGAcUGGCGCGA-CAGC-C-GCCa -5'
6812 5' -61.3 NC_001875.2 + 54596 0.66 0.654454
Target:  5'- gGCGCGCccACgGCGCgguaUCGGUGGa -3'
miRNA:   3'- aCGUGCGacUGgCGCGac--AGCCGCCa -5'
6812 5' -61.3 NC_001875.2 + 127277 0.66 0.654454
Target:  5'- aUGCG-GCUGcUCGCGUUGcUGGCGGc -3'
miRNA:   3'- -ACGUgCGACuGGCGCGACaGCCGCCa -5'
6812 5' -61.3 NC_001875.2 + 63958 0.66 0.654454
Target:  5'- cGCuguCGCcGACCGCGCUGaaccagaaUCuGGCGa- -3'
miRNA:   3'- aCGu--GCGaCUGGCGCGAC--------AG-CCGCca -5'
6812 5' -61.3 NC_001875.2 + 73663 0.66 0.654454
Target:  5'- gGCG-GCUGcgGCUGCuGCUG-CGGCGGc -3'
miRNA:   3'- aCGUgCGAC--UGGCG-CGACaGCCGCCa -5'
6812 5' -61.3 NC_001875.2 + 71091 0.66 0.654454
Target:  5'- aGCAUGCa-GCUGuCGCUGUUuaaGGCGGa -3'
miRNA:   3'- aCGUGCGacUGGC-GCGACAG---CCGCCa -5'
6812 5' -61.3 NC_001875.2 + 49966 0.66 0.644452
Target:  5'- cGCGCGCUGcugucGCUGCuGCUGUagcugacgCGGCGc- -3'
miRNA:   3'- aCGUGCGAC-----UGGCG-CGACA--------GCCGCca -5'
6812 5' -61.3 NC_001875.2 + 22589 0.66 0.644452
Target:  5'- gGCGCGUUGGCCGgccgGCUGUaCGGUu-- -3'
miRNA:   3'- aCGUGCGACUGGCg---CGACA-GCCGcca -5'
6812 5' -61.3 NC_001875.2 + 30449 0.66 0.644452
Target:  5'- cGCGCaGCUGGCgCGCGUUG-CGcGCGu- -3'
miRNA:   3'- aCGUG-CGACUG-GCGCGACaGC-CGCca -5'
6812 5' -61.3 NC_001875.2 + 86070 0.66 0.644452
Target:  5'- uUGCGCGCUugacGACCuCGgUGUCGGgcuCGGc -3'
miRNA:   3'- -ACGUGCGA----CUGGcGCgACAGCC---GCCa -5'
6812 5' -61.3 NC_001875.2 + 63283 0.66 0.634441
Target:  5'- gGUGCGC-GACCGcCGCcGccgCGGCGGc -3'
miRNA:   3'- aCGUGCGaCUGGC-GCGaCa--GCCGCCa -5'
6812 5' -61.3 NC_001875.2 + 104208 0.66 0.634441
Target:  5'- aUGCGCGaaccacGGCCuaaaccacgcgGUGCUGUUGGUGGg -3'
miRNA:   3'- -ACGUGCga----CUGG-----------CGCGACAGCCGCCa -5'
6812 5' -61.3 NC_001875.2 + 12673 0.66 0.634441
Target:  5'- cGCGCGCcgcguUGGCCGgGUg--UGGCGGc -3'
miRNA:   3'- aCGUGCG-----ACUGGCgCGacaGCCGCCa -5'
6812 5' -61.3 NC_001875.2 + 131224 0.66 0.625429
Target:  5'- gGCGCGCuUGACaaCGCGCUGgugguuaauauagugCGGCaGUu -3'
miRNA:   3'- aCGUGCG-ACUG--GCGCGACa--------------GCCGcCA- -5'
6812 5' -61.3 NC_001875.2 + 39099 0.66 0.624427
Target:  5'- gUGCcaACGCUGcaguuCCGCGCUccaUGGCGGc -3'
miRNA:   3'- -ACG--UGCGACu----GGCGCGAca-GCCGCCa -5'
6812 5' -61.3 NC_001875.2 + 125858 0.66 0.61442
Target:  5'- gGCACGCgcugGGCC-UGCccGUCGGCGa- -3'
miRNA:   3'- aCGUGCGa---CUGGcGCGa-CAGCCGCca -5'
6812 5' -61.3 NC_001875.2 + 27200 0.66 0.61442
Target:  5'- gGCACGCgcuagGAUCG-GCcuUGUCGGCGc- -3'
miRNA:   3'- aCGUGCGa----CUGGCgCG--ACAGCCGCca -5'
6812 5' -61.3 NC_001875.2 + 126785 0.66 0.61442
Target:  5'- cUGCG-GCUGugCaaGCUG-CGGCGGc -3'
miRNA:   3'- -ACGUgCGACugGcgCGACaGCCGCCa -5'
6812 5' -61.3 NC_001875.2 + 100175 0.66 0.613419
Target:  5'- gGCACGCUGGCCcaguccagacgaaGCG-UGUUGGCcagcccggGGUa -3'
miRNA:   3'- aCGUGCGACUGG-------------CGCgACAGCCG--------CCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.