miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6813 3' -51.2 NC_001875.2 + 18170 0.66 0.993862
Target:  5'- cGCGACGCcgccacUGUgGCGguGCcgGCGGg -3'
miRNA:   3'- -CGCUGCGuuac--ACAgCGCuuUG--CGCC- -5'
6813 3' -51.2 NC_001875.2 + 43313 0.66 0.993862
Target:  5'- aGCGGCGCGcg----CGCGGgucGGCGUGGu -3'
miRNA:   3'- -CGCUGCGUuacacaGCGCU---UUGCGCC- -5'
6813 3' -51.2 NC_001875.2 + 125029 0.66 0.993862
Target:  5'- cGCGGCGCAGcUG-GUUcaGCGAcccGAucUGCGGg -3'
miRNA:   3'- -CGCUGCGUU-ACaCAG--CGCU---UU--GCGCC- -5'
6813 3' -51.2 NC_001875.2 + 58788 0.66 0.993772
Target:  5'- cGCGGCGCAAaacagCGCcGAGuuggcccagcugcACGCGGa -3'
miRNA:   3'- -CGCUGCGUUacacaGCG-CUU-------------UGCGCC- -5'
6813 3' -51.2 NC_001875.2 + 81566 0.66 0.99359
Target:  5'- cGCGcuCGCGGUGUugcuguuuauguacGUCGCGGuGGCGCu- -3'
miRNA:   3'- -CGCu-GCGUUACA--------------CAGCGCU-UUGCGcc -5'
6813 3' -51.2 NC_001875.2 + 33291 0.66 0.993308
Target:  5'- cGCGuucuugaGCAcgGUGUCGUaaGAcacggauauuuucaaAACGCGGc -3'
miRNA:   3'- -CGCug-----CGUuaCACAGCG--CU---------------UUGCGCC- -5'
6813 3' -51.2 NC_001875.2 + 21678 0.66 0.993212
Target:  5'- uGCGACGCcgcccgacgaGCGcGACGCGGu -3'
miRNA:   3'- -CGCUGCGuuacacag--CGCuUUGCGCC- -5'
6813 3' -51.2 NC_001875.2 + 124756 0.66 0.992918
Target:  5'- cGCGcACGUAGUagcugccgcccGUGUUGuUGAGcGCGCGGa -3'
miRNA:   3'- -CGC-UGCGUUA-----------CACAGC-GCUU-UGCGCC- -5'
6813 3' -51.2 NC_001875.2 + 111772 0.66 0.992918
Target:  5'- cCGACGacugGUGUCGCugguGACgGCGGu -3'
miRNA:   3'- cGCUGCguuaCACAGCGcu--UUG-CGCC- -5'
6813 3' -51.2 NC_001875.2 + 33425 0.66 0.992918
Target:  5'- cGCuucCGCAAUGUcGUgCGUGAgcgcguucAGCGCGGc -3'
miRNA:   3'- -CGcu-GCGUUACA-CA-GCGCU--------UUGCGCC- -5'
6813 3' -51.2 NC_001875.2 + 5572 0.66 0.992918
Target:  5'- gGCGACuguGCGGUuuugcGUGUCGCGu--CGCa- -3'
miRNA:   3'- -CGCUG---CGUUA-----CACAGCGCuuuGCGcc -5'
6813 3' -51.2 NC_001875.2 + 94003 0.66 0.992918
Target:  5'- uGCGcGCGCAGcGUGUCGU---ACGUGa -3'
miRNA:   3'- -CGC-UGCGUUaCACAGCGcuuUGCGCc -5'
6813 3' -51.2 NC_001875.2 + 60388 0.66 0.992918
Target:  5'- cGCGucCGCAuUGUGaaUUGCGAGcuGCGCa- -3'
miRNA:   3'- -CGCu-GCGUuACAC--AGCGCUU--UGCGcc -5'
6813 3' -51.2 NC_001875.2 + 87683 0.66 0.992298
Target:  5'- cGCGaaaGCGCAGUGU-UUGCGGAcacggaaagcgcucCGCGGa -3'
miRNA:   3'- -CGC---UGCGUUACAcAGCGCUUu-------------GCGCC- -5'
6813 3' -51.2 NC_001875.2 + 70774 0.66 0.991861
Target:  5'- gGCGGCGCAGuuuuUGUGcagcaaGUGGAAUGCu- -3'
miRNA:   3'- -CGCUGCGUU----ACACag----CGCUUUGCGcc -5'
6813 3' -51.2 NC_001875.2 + 95738 0.66 0.991861
Target:  5'- aGCGGCGCcgccgccgcGUGcUGcCGCGcGAGCGCGu -3'
miRNA:   3'- -CGCUGCGu--------UAC-ACaGCGC-UUUGCGCc -5'
6813 3' -51.2 NC_001875.2 + 88995 0.66 0.991861
Target:  5'- uGCGGCGCGccGgauuugCGCGcuACGCGu -3'
miRNA:   3'- -CGCUGCGUuaCaca---GCGCuuUGCGCc -5'
6813 3' -51.2 NC_001875.2 + 89024 0.66 0.991861
Target:  5'- uGCGAgCGCAAguUGUCauucaGCGugcccguGCGCGGg -3'
miRNA:   3'- -CGCU-GCGUUacACAG-----CGCuu-----UGCGCC- -5'
6813 3' -51.2 NC_001875.2 + 35414 0.66 0.991405
Target:  5'- aGCGACGCcgacaagCGCGAGuuuGCGCGc -3'
miRNA:   3'- -CGCUGCGuuacacaGCGCUU---UGCGCc -5'
6813 3' -51.2 NC_001875.2 + 41529 0.66 0.990683
Target:  5'- gGCGGCGU----UGUCGUGAccGACGCc- -3'
miRNA:   3'- -CGCUGCGuuacACAGCGCU--UUGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.