miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6813 5' -54.2 NC_001875.2 + 99994 0.66 0.955358
Target:  5'- gGAgCGCUGUUagCGCGGUgcuggUCGCaaaCCu -3'
miRNA:   3'- -CUgGCGGCAAa-GCGCCAaa---AGCGc--GG- -5'
6813 5' -54.2 NC_001875.2 + 43103 0.66 0.955358
Target:  5'- cGCCGCaGUUUUGCGGcaggUUggaGcCGCCg -3'
miRNA:   3'- cUGGCGgCAAAGCGCCa---AAag-C-GCGG- -5'
6813 5' -54.2 NC_001875.2 + 101643 0.66 0.955358
Target:  5'- aACgGCCG--UCGCGGcgaacgGCGCCa -3'
miRNA:   3'- cUGgCGGCaaAGCGCCaaaag-CGCGG- -5'
6813 5' -54.2 NC_001875.2 + 7376 0.66 0.955358
Target:  5'- -cCCGCCGgaucggccaCGCGGUUgcgCGaCGCg -3'
miRNA:   3'- cuGGCGGCaaa------GCGCCAAaa-GC-GCGg -5'
6813 5' -54.2 NC_001875.2 + 128777 0.66 0.955358
Target:  5'- cGACC-CCGg--CGCGccgcugCGCGCCu -3'
miRNA:   3'- -CUGGcGGCaaaGCGCcaaaa-GCGCGG- -5'
6813 5' -54.2 NC_001875.2 + 36708 0.66 0.955358
Target:  5'- aGAUCGCCGgc-CGUGG----CGCGCUc -3'
miRNA:   3'- -CUGGCGGCaaaGCGCCaaaaGCGCGG- -5'
6813 5' -54.2 NC_001875.2 + 69001 0.66 0.955358
Target:  5'- uGCCGCgGgggcaagcaCGUGGUgg-CGCGCUg -3'
miRNA:   3'- cUGGCGgCaaa------GCGCCAaaaGCGCGG- -5'
6813 5' -54.2 NC_001875.2 + 100151 0.66 0.955358
Target:  5'- uGCCGCUG--UCGCGGUgaucacggUggGCGCg -3'
miRNA:   3'- cUGGCGGCaaAGCGCCAa-------AagCGCGg -5'
6813 5' -54.2 NC_001875.2 + 122310 0.66 0.954966
Target:  5'- aGCCGCguccuauCGgg-CGCGGcUUcCGCGCCc -3'
miRNA:   3'- cUGGCG-------GCaaaGCGCCaAAaGCGCGG- -5'
6813 5' -54.2 NC_001875.2 + 106825 0.66 0.951335
Target:  5'- uGugCGgUGUUcgUGCGGUgUUCGUGCg -3'
miRNA:   3'- -CugGCgGCAAa-GCGCCAaAAGCGCGg -5'
6813 5' -54.2 NC_001875.2 + 103055 0.66 0.951335
Target:  5'- aGCCGUCGUcgUCGCacaGUUUgaCGCGCa -3'
miRNA:   3'- cUGGCGGCAa-AGCGc--CAAAa-GCGCGg -5'
6813 5' -54.2 NC_001875.2 + 82940 0.66 0.951335
Target:  5'- -uCCGUCGUcucggucgUCGCGGcgggCGCGUCc -3'
miRNA:   3'- cuGGCGGCAa-------AGCGCCaaaaGCGCGG- -5'
6813 5' -54.2 NC_001875.2 + 50544 0.66 0.951335
Target:  5'- cGCCGCCGgcggCGCGcGUgucUUUUGCGg- -3'
miRNA:   3'- cUGGCGGCaaa-GCGC-CA---AAAGCGCgg -5'
6813 5' -54.2 NC_001875.2 + 77677 0.66 0.951335
Target:  5'- cGCCGCUGUccgaGCGcGUaUUUGCGCg -3'
miRNA:   3'- cUGGCGGCAaag-CGC-CAaAAGCGCGg -5'
6813 5' -54.2 NC_001875.2 + 121913 0.66 0.951335
Target:  5'- cACCGCUagaauacUUGCGGcccgCGCGCCa -3'
miRNA:   3'- cUGGCGGcaa----AGCGCCaaaaGCGCGG- -5'
6813 5' -54.2 NC_001875.2 + 74058 0.66 0.951335
Target:  5'- cGCUGCuCGg--CGUGGaUUgugCGCGCCc -3'
miRNA:   3'- cUGGCG-GCaaaGCGCCaAAa--GCGCGG- -5'
6813 5' -54.2 NC_001875.2 + 25920 0.66 0.951335
Target:  5'- cGGCCaauGCCcgaguuUUUCGUGGUggcgcCGCGCCc -3'
miRNA:   3'- -CUGG---CGGc-----AAAGCGCCAaaa--GCGCGG- -5'
6813 5' -54.2 NC_001875.2 + 46493 0.66 0.951335
Target:  5'- cGCCGCCacggCGuCGGcgUUCGCGgCg -3'
miRNA:   3'- cUGGCGGcaaaGC-GCCaaAAGCGCgG- -5'
6813 5' -54.2 NC_001875.2 + 37502 0.66 0.951335
Target:  5'- cGGCCGgCGacggUGCGGacgaCGCGCCc -3'
miRNA:   3'- -CUGGCgGCaaa-GCGCCaaaaGCGCGG- -5'
6813 5' -54.2 NC_001875.2 + 38645 0.66 0.951335
Target:  5'- cGCCGCCGacUCGCcGUaccgCGUGCUg -3'
miRNA:   3'- cUGGCGGCaaAGCGcCAaaa-GCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.