miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 3' -53.5 NC_001875.2 + 40147 0.66 0.954345
Target:  5'- uGGGCUGGCACc---GCACGg----- -3'
miRNA:   3'- gCCCGGCCGUGaacuCGUGCaaauag -5'
6815 3' -53.5 NC_001875.2 + 125179 0.67 0.925605
Target:  5'- aGcGGCCGuugcccagauuGCGCgugcUGGGCACGUUUAg- -3'
miRNA:   3'- gC-CCGGC-----------CGUGa---ACUCGUGCAAAUag -5'
6815 3' -53.5 NC_001875.2 + 49652 0.67 0.931026
Target:  5'- gCGGccGCCGGCGCccaucGAGCACGa----- -3'
miRNA:   3'- -GCC--CGGCCGUGaa---CUCGUGCaaauag -5'
6815 3' -53.5 NC_001875.2 + 18555 0.66 0.936192
Target:  5'- uGGGCgugGGUGuCUUGAGCGCGcUUUgcGUCg -3'
miRNA:   3'- gCCCGg--CCGU-GAACUCGUGC-AAA--UAG- -5'
6815 3' -53.5 NC_001875.2 + 26228 0.66 0.936192
Target:  5'- aGGGCCGcGUACcgGGGCAUGg----- -3'
miRNA:   3'- gCCCGGC-CGUGaaCUCGUGCaaauag -5'
6815 3' -53.5 NC_001875.2 + 110311 0.66 0.945767
Target:  5'- aCGGuGCUGG-ACUgcGGCAUGUUUAUUa -3'
miRNA:   3'- -GCC-CGGCCgUGAacUCGUGCAAAUAG- -5'
6815 3' -53.5 NC_001875.2 + 37882 0.66 0.945767
Target:  5'- gCGGGCCGcGCcagcgGCUUGcuGGCGCGg----- -3'
miRNA:   3'- -GCCCGGC-CG-----UGAAC--UCGUGCaaauag -5'
6815 3' -53.5 NC_001875.2 + 122130 0.66 0.945767
Target:  5'- uCGGGCgCGGCGCggccGGCGCGc----- -3'
miRNA:   3'- -GCCCG-GCCGUGaac-UCGUGCaaauag -5'
6815 3' -53.5 NC_001875.2 + 1011 0.66 0.950179
Target:  5'- gCGGGCCcGUuCUUGcAGCGCGUg---- -3'
miRNA:   3'- -GCCCGGcCGuGAAC-UCGUGCAaauag -5'
6815 3' -53.5 NC_001875.2 + 80130 0.67 0.914001
Target:  5'- uGGGUCGucGCACUcGuGCGCGUcgcugcUUGUCa -3'
miRNA:   3'- gCCCGGC--CGUGAaCuCGUGCA------AAUAG- -5'
6815 3' -53.5 NC_001875.2 + 26536 0.67 0.914001
Target:  5'- uGaGCUGGCGCUUGAGUcgGCGUg---- -3'
miRNA:   3'- gCcCGGCCGUGAACUCG--UGCAaauag -5'
6815 3' -53.5 NC_001875.2 + 124243 0.67 0.90782
Target:  5'- gCGGGCggCGGCACaaUGAcgacaggcgGCGCGUUgGUCg -3'
miRNA:   3'- -GCCCG--GCCGUGa-ACU---------CGUGCAAaUAG- -5'
6815 3' -53.5 NC_001875.2 + 39175 0.72 0.687555
Target:  5'- gCGGGCCGGCGgUUGcGUGgCGUUUAc- -3'
miRNA:   3'- -GCCCGGCCGUgAACuCGU-GCAAAUag -5'
6815 3' -53.5 NC_001875.2 + 31740 0.7 0.797127
Target:  5'- -uGGCCcgcGGCGUUUGAGCGCGagUUUGUCa -3'
miRNA:   3'- gcCCGG---CCGUGAACUCGUGC--AAAUAG- -5'
6815 3' -53.5 NC_001875.2 + 110267 0.69 0.824235
Target:  5'- uGGGCCGGCugGCcgcgGAGCGCGc----- -3'
miRNA:   3'- gCCCGGCCG--UGaa--CUCGUGCaaauag -5'
6815 3' -53.5 NC_001875.2 + 19252 0.69 0.841393
Target:  5'- aCGGGCCGGUuCUUccacAGCGCGUa---- -3'
miRNA:   3'- -GCCCGGCCGuGAAc---UCGUGCAaauag -5'
6815 3' -53.5 NC_001875.2 + 98156 0.69 0.841393
Target:  5'- gCGGGCgGcGCACgucGGGC-CGUUUGUUu -3'
miRNA:   3'- -GCCCGgC-CGUGaa-CUCGuGCAAAUAG- -5'
6815 3' -53.5 NC_001875.2 + 63326 0.69 0.857741
Target:  5'- uGGcGUCGGUGCUcaauucguuguUGAGCACGUUgagCa -3'
miRNA:   3'- gCC-CGGCCGUGA-----------ACUCGUGCAAauaG- -5'
6815 3' -53.5 NC_001875.2 + 48741 0.68 0.880621
Target:  5'- gCGGGCCaGCACaguAGCACGUa---- -3'
miRNA:   3'- -GCCCGGcCGUGaacUCGUGCAaauag -5'
6815 3' -53.5 NC_001875.2 + 111924 0.68 0.89941
Target:  5'- aCGGGCCGGUgcaGCUgccguacGAGCagcuaaaagcgcacGCGUUUcgCa -3'
miRNA:   3'- -GCCCGGCCG---UGAa------CUCG--------------UGCAAAuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.