miRNA display CGI


Results 61 - 80 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 48190 0.67 0.928266
Target:  5'- uGUGGUAuuGCGCACUUuggGCAaauGCCCCg -3'
miRNA:   3'- -CAUUAU--CGCGUGAGca-UGUgg-CGGGG- -5'
6815 5' -53 NC_001875.2 + 42493 0.67 0.928266
Target:  5'- -----cGCGCACgccgucguccgCGUGCGCCGCaaagcugaggCCCg -3'
miRNA:   3'- cauuauCGCGUGa----------GCAUGUGGCG----------GGG- -5'
6815 5' -53 NC_001875.2 + 17704 0.67 0.928266
Target:  5'- cGUAcaAGCuGCAUUUGUACGCCaGCCa- -3'
miRNA:   3'- -CAUuaUCG-CGUGAGCAUGUGG-CGGgg -5'
6815 5' -53 NC_001875.2 + 47442 0.67 0.9479
Target:  5'- -----cGCGCcgccgccgaaGCUcCGgcuaccgACGCCGCCCCg -3'
miRNA:   3'- cauuauCGCG----------UGA-GCa------UGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 4940 0.67 0.933552
Target:  5'- ----gGGCaGCACUaacacuuUGCGCCGCCUCg -3'
miRNA:   3'- cauuaUCG-CGUGAgc-----AUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 52827 0.67 0.933552
Target:  5'- ---cUAGCGCgcgACUCGgacACGCUGUCCa -3'
miRNA:   3'- cauuAUCGCG---UGAGCa--UGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 33031 0.67 0.938586
Target:  5'- ----aAGCGCAgcgCGgcggGCGCCGCgCCg -3'
miRNA:   3'- cauuaUCGCGUga-GCa---UGUGGCGgGG- -5'
6815 5' -53 NC_001875.2 + 119839 0.67 0.938586
Target:  5'- ---uUGGcCGCGCUCGccaccACAcCCGCgCCCa -3'
miRNA:   3'- cauuAUC-GCGUGAGCa----UGU-GGCG-GGG- -5'
6815 5' -53 NC_001875.2 + 85252 0.67 0.928266
Target:  5'- -gGGUucCGCGCUCGgcgcggACACgagCGCCCCg -3'
miRNA:   3'- caUUAucGCGUGAGCa-----UGUG---GCGGGG- -5'
6815 5' -53 NC_001875.2 + 44469 0.67 0.928266
Target:  5'- ----cAGUGCGCcaagUCGUGCACCGgCgCg -3'
miRNA:   3'- cauuaUCGCGUG----AGCAUGUGGCgGgG- -5'
6815 5' -53 NC_001875.2 + 110347 0.67 0.943367
Target:  5'- ----gGGCuGCACUCG-GCGUCGCCCg -3'
miRNA:   3'- cauuaUCG-CGUGAGCaUGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 15173 0.67 0.943367
Target:  5'- ----cAGCaGCAuCUUGUACAUgGCCCa -3'
miRNA:   3'- cauuaUCG-CGU-GAGCAUGUGgCGGGg -5'
6815 5' -53 NC_001875.2 + 67082 0.67 0.938586
Target:  5'- cGUAAUcGGUGCACUUGUuguaccagaucGCuuCGCCCa -3'
miRNA:   3'- -CAUUA-UCGCGUGAGCA-----------UGugGCGGGg -5'
6815 5' -53 NC_001875.2 + 43714 0.67 0.938586
Target:  5'- ---uUGGCGcCGCUCa-GCACCGUgCCCg -3'
miRNA:   3'- cauuAUCGC-GUGAGcaUGUGGCG-GGG- -5'
6815 5' -53 NC_001875.2 + 38410 0.67 0.943367
Target:  5'- -cGAUGaaGCACUCGccgUGCAgCGCCUCu -3'
miRNA:   3'- caUUAUcgCGUGAGC---AUGUgGCGGGG- -5'
6815 5' -53 NC_001875.2 + 1720 0.67 0.938586
Target:  5'- cUGcgGGCGCGacacCGgucGCGCCGCCgCCg -3'
miRNA:   3'- cAUuaUCGCGUga--GCa--UGUGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 42583 0.67 0.937102
Target:  5'- ----cGGCGCACgcgcgCGUcagcucggcgcuggGCACCGCCa- -3'
miRNA:   3'- cauuaUCGCGUGa----GCA--------------UGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 19347 0.67 0.935596
Target:  5'- gGgcGUGGUGCGCggagCGUugGCCGacguaaaguuuaaaCCCa -3'
miRNA:   3'- -CauUAUCGCGUGa---GCAugUGGCg-------------GGG- -5'
6815 5' -53 NC_001875.2 + 131073 0.67 0.933552
Target:  5'- -----cGCGCGCcgcCGUcaGCUGCCCCa -3'
miRNA:   3'- cauuauCGCGUGa--GCAugUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 114750 0.68 0.91089
Target:  5'- -cAGUGGCGCGCggCuUGC-CCGCCUg -3'
miRNA:   3'- caUUAUCGCGUGa-GcAUGuGGCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.