miRNA display CGI


Results 101 - 120 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 42702 0.69 0.861748
Target:  5'- ----cGGCGCGCgguuUCGUACGCaaggCGCaCCCg -3'
miRNA:   3'- cauuaUCGCGUG----AGCAUGUG----GCG-GGG- -5'
6815 5' -53 NC_001875.2 + 23093 0.69 0.869471
Target:  5'- -----cGCGC-CgCGUGCAgCUGCCCCg -3'
miRNA:   3'- cauuauCGCGuGaGCAUGU-GGCGGGG- -5'
6815 5' -53 NC_001875.2 + 12175 0.69 0.876968
Target:  5'- ----aAGC-CGCU-GUGCGCCGCCgCCg -3'
miRNA:   3'- cauuaUCGcGUGAgCAUGUGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 48829 0.69 0.876968
Target:  5'- -----cGCGCGCUacgGCGCCGCUUCa -3'
miRNA:   3'- cauuauCGCGUGAgcaUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 37432 0.69 0.884234
Target:  5'- --cGUGGCGCAgUCGgcgGCcaaauaGCCGCCgCa -3'
miRNA:   3'- cauUAUCGCGUgAGCa--UG------UGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 7948 0.69 0.884234
Target:  5'- ---uUAGC-CGCUCGUcguugACACCGCCa- -3'
miRNA:   3'- cauuAUCGcGUGAGCA-----UGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 102999 0.69 0.887075
Target:  5'- cGUGGUGGCGUGCggcaaGUGCGCUGCgggcgugaccacgugCCCc -3'
miRNA:   3'- -CAUUAUCGCGUGag---CAUGUGGCG---------------GGG- -5'
6815 5' -53 NC_001875.2 + 51198 0.69 0.876968
Target:  5'- ----cGGCGCGgUUcugGCGCCGCCCg -3'
miRNA:   3'- cauuaUCGCGUgAGca-UGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 131003 0.69 0.869471
Target:  5'- -aAAUGGaCGUGCUgcacCACCGCCCCa -3'
miRNA:   3'- caUUAUC-GCGUGAgcauGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 20043 0.69 0.884234
Target:  5'- ----aGGCGCcgucgGCcgCGUGCACCGCCg- -3'
miRNA:   3'- cauuaUCGCG-----UGa-GCAUGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 99836 0.7 0.853805
Target:  5'- ----cAGUGCGCUgCGU-CGCCGCCgCu -3'
miRNA:   3'- cauuaUCGCGUGA-GCAuGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 86289 0.7 0.853805
Target:  5'- ----gAGCGCAaaucguacaCGUGCugCGCCCUu -3'
miRNA:   3'- cauuaUCGCGUga-------GCAUGugGCGGGG- -5'
6815 5' -53 NC_001875.2 + 68309 0.7 0.853805
Target:  5'- ----aGGUGUACUCGUugGCuCGCCa- -3'
miRNA:   3'- cauuaUCGCGUGAGCAugUG-GCGGgg -5'
6815 5' -53 NC_001875.2 + 53521 0.7 0.853805
Target:  5'- cGUGuuuuUGGCGCACgUCGUGCGCUaccagcgcgaGCCgCa -3'
miRNA:   3'- -CAUu---AUCGCGUG-AGCAUGUGG----------CGGgG- -5'
6815 5' -53 NC_001875.2 + 94615 0.7 0.852999
Target:  5'- --uGUAGCGCggcagcgGCUUGcUGCACCGCUgCg -3'
miRNA:   3'- cauUAUCGCG-------UGAGC-AUGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 72947 0.7 0.84565
Target:  5'- --cGUAGCGCGCguucgCGgccugcaaACGCUGCUCCg -3'
miRNA:   3'- cauUAUCGCGUGa----GCa-------UGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 113285 0.7 0.837289
Target:  5'- ----aAGCGCGCUCaagACACCcacGCCCa -3'
miRNA:   3'- cauuaUCGCGUGAGca-UGUGG---CGGGg -5'
6815 5' -53 NC_001875.2 + 36541 0.7 0.837289
Target:  5'- ----cGGCGCuggCGcGCACCGUCCCc -3'
miRNA:   3'- cauuaUCGCGugaGCaUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 14942 0.7 0.84565
Target:  5'- -gGAUGGCGUugGCgUCGUGCACCucauaCCCUg -3'
miRNA:   3'- caUUAUCGCG--UG-AGCAUGUGGc----GGGG- -5'
6815 5' -53 NC_001875.2 + 22726 0.7 0.853805
Target:  5'- --uGUGGCcUACUUGUGCGCCGgCCa -3'
miRNA:   3'- cauUAUCGcGUGAGCAUGUGGCgGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.