miRNA display CGI


Results 61 - 80 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 58044 0.7 0.837289
Target:  5'- ----cGGCGCGCUgcCGUuccaGCCGCCgCCg -3'
miRNA:   3'- cauuaUCGCGUGA--GCAug--UGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 62604 0.7 0.837289
Target:  5'- ----cAGCGCGC-CGUucgACGCCGCCg- -3'
miRNA:   3'- cauuaUCGCGUGaGCA---UGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 18369 0.7 0.819983
Target:  5'- ----cGGCGUGCuaaugcaauugUCGUACACCGCCg- -3'
miRNA:   3'- cauuaUCGCGUG-----------AGCAUGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 36494 0.69 0.861748
Target:  5'- -----cGCGUGCaCGUGCGCCGCCg- -3'
miRNA:   3'- cauuauCGCGUGaGCAUGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 96895 0.69 0.884234
Target:  5'- --cGUGGCGUACagcuccggguugUUGUcACGCCGCaCCCa -3'
miRNA:   3'- cauUAUCGCGUG------------AGCA-UGUGGCG-GGG- -5'
6815 5' -53 NC_001875.2 + 48829 0.69 0.876968
Target:  5'- -----cGCGCGCUacgGCGCCGCUUCa -3'
miRNA:   3'- cauuauCGCGUGAgcaUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 23093 0.69 0.869471
Target:  5'- -----cGCGC-CgCGUGCAgCUGCCCCg -3'
miRNA:   3'- cauuauCGCGuGaGCAUGU-GGCGGGG- -5'
6815 5' -53 NC_001875.2 + 102999 0.69 0.887075
Target:  5'- cGUGGUGGCGUGCggcaaGUGCGCUGCgggcgugaccacgugCCCc -3'
miRNA:   3'- -CAUUAUCGCGUGag---CAUGUGGCG---------------GGG- -5'
6815 5' -53 NC_001875.2 + 69484 0.69 0.887075
Target:  5'- ---cUGGCGCGCgacccaaacugGCGCCGCgCCCa -3'
miRNA:   3'- cauuAUCGCGUGagca-------UGUGGCG-GGG- -5'
6815 5' -53 NC_001875.2 + 51198 0.69 0.876968
Target:  5'- ----cGGCGCGgUUcugGCGCCGCCCg -3'
miRNA:   3'- cauuaUCGCGUgAGca-UGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 33860 0.69 0.891263
Target:  5'- -----cGCGCAC-CGUGCGCgGCCg- -3'
miRNA:   3'- cauuauCGCGUGaGCAUGUGgCGGgg -5'
6815 5' -53 NC_001875.2 + 20043 0.69 0.884234
Target:  5'- ----aGGCGCcgucgGCcgCGUGCACCGCCg- -3'
miRNA:   3'- cauuaUCGCG-----UGa-GCAUGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 37432 0.69 0.884234
Target:  5'- --cGUGGCGCAgUCGgcgGCcaaauaGCCGCCgCa -3'
miRNA:   3'- cauUAUCGCGUgAGCa--UG------UGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 42702 0.69 0.861748
Target:  5'- ----cGGCGCGCgguuUCGUACGCaaggCGCaCCCg -3'
miRNA:   3'- cauuaUCGCGUG----AGCAUGUG----GCG-GGG- -5'
6815 5' -53 NC_001875.2 + 94335 0.69 0.891263
Target:  5'- ----gGGCGCG-UCGUccGCACCGUCgCCg -3'
miRNA:   3'- cauuaUCGCGUgAGCA--UGUGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 93998 0.69 0.869471
Target:  5'- uGUGGUGcGCGCGCagcgugUCGUACGugaUCGCCaCCg -3'
miRNA:   3'- -CAUUAU-CGCGUG------AGCAUGU---GGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 131003 0.69 0.869471
Target:  5'- -aAAUGGaCGUGCUgcacCACCGCCCCa -3'
miRNA:   3'- caUUAUC-GCGUGAgcauGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 12175 0.69 0.876968
Target:  5'- ----aAGC-CGCU-GUGCGCCGCCgCCg -3'
miRNA:   3'- cauuaUCGcGUGAgCAUGUGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 7948 0.69 0.884234
Target:  5'- ---uUAGC-CGCUCGUcguugACACCGCCa- -3'
miRNA:   3'- cauuAUCGcGUGAGCA-----UGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 84859 0.68 0.922727
Target:  5'- --cGUGGUGCGCUCaucgcggcuCACCGUCUCg -3'
miRNA:   3'- cauUAUCGCGUGAGcau------GUGGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.