Results 41 - 60 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6815 | 5' | -53 | NC_001875.2 | + | 89533 | 0.71 | 0.801953 |
Target: 5'- ----gGGCGCGCUCGaucuguacuugGCGCCGCgggugCCCa -3' miRNA: 3'- cauuaUCGCGUGAGCa----------UGUGGCG-----GGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 49785 | 0.7 | 0.811054 |
Target: 5'- ----cGGUGCugUacUGcGCGCCGCCCCc -3' miRNA: 3'- cauuaUCGCGugA--GCaUGUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 9711 | 0.7 | 0.811054 |
Target: 5'- -----uGCGCGC-CGgccGCGCCGCgCCCg -3' miRNA: 3'- cauuauCGCGUGaGCa--UGUGGCG-GGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 18163 | 0.7 | 0.811054 |
Target: 5'- ----cGGCGCGCgCG-ACGCCGCCaCUg -3' miRNA: 3'- cauuaUCGCGUGaGCaUGUGGCGG-GG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 48019 | 0.7 | 0.811054 |
Target: 5'- cGUGGUGGCGgccCACgUGgcCGCCGCCCa -3' miRNA: 3'- -CAUUAUCGC---GUGaGCauGUGGCGGGg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 73981 | 0.7 | 0.811054 |
Target: 5'- ----aAGCGUGCUC--AUACCGCUCCa -3' miRNA: 3'- cauuaUCGCGUGAGcaUGUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 18369 | 0.7 | 0.819983 |
Target: 5'- ----cGGCGUGCuaaugcaauugUCGUACACCGCCg- -3' miRNA: 3'- cauuaUCGCGUG-----------AGCAUGUGGCGGgg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 56252 | 0.7 | 0.828731 |
Target: 5'- ----cGGCGCGCggcugcaGUACuuuGCCGCCCUc -3' miRNA: 3'- cauuaUCGCGUGag-----CAUG---UGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 51840 | 0.7 | 0.832177 |
Target: 5'- ----cGGUGCaauACUCGUacucgacguuccucaACACCGCCUCg -3' miRNA: 3'- cauuaUCGCG---UGAGCA---------------UGUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 58044 | 0.7 | 0.837289 |
Target: 5'- ----cGGCGCGCUgcCGUuccaGCCGCCgCCg -3' miRNA: 3'- cauuaUCGCGUGA--GCAug--UGGCGG-GG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 62604 | 0.7 | 0.837289 |
Target: 5'- ----cAGCGCGC-CGUucgACGCCGCCg- -3' miRNA: 3'- cauuaUCGCGUGaGCA---UGUGGCGGgg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 119056 | 0.7 | 0.837289 |
Target: 5'- ----cGGCGUGCgcaUGUGCGCggCGCCCCg -3' miRNA: 3'- cauuaUCGCGUGa--GCAUGUG--GCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 36541 | 0.7 | 0.837289 |
Target: 5'- ----cGGCGCuggCGcGCACCGUCCCc -3' miRNA: 3'- cauuaUCGCGugaGCaUGUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 113285 | 0.7 | 0.837289 |
Target: 5'- ----aAGCGCGCUCaagACACCcacGCCCa -3' miRNA: 3'- cauuaUCGCGUGAGca-UGUGG---CGGGg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 14942 | 0.7 | 0.84565 |
Target: 5'- -gGAUGGCGUugGCgUCGUGCACCucauaCCCUg -3' miRNA: 3'- caUUAUCGCG--UG-AGCAUGUGGc----GGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 72947 | 0.7 | 0.84565 |
Target: 5'- --cGUAGCGCGCguucgCGgccugcaaACGCUGCUCCg -3' miRNA: 3'- cauUAUCGCGUGa----GCa-------UGUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 78314 | 0.7 | 0.84565 |
Target: 5'- cUGGUAGCGCACgaCGUGCGCCaaaaacacgcGCaCCg -3' miRNA: 3'- cAUUAUCGCGUGa-GCAUGUGG----------CGgGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 94615 | 0.7 | 0.852999 |
Target: 5'- --uGUAGCGCggcagcgGCUUGcUGCACCGCUgCg -3' miRNA: 3'- cauUAUCGCG-------UGAGC-AUGUGGCGGgG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 22726 | 0.7 | 0.853805 |
Target: 5'- --uGUGGCcUACUUGUGCGCCGgCCa -3' miRNA: 3'- cauUAUCGcGUGAGCAUGUGGCgGGg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 53521 | 0.7 | 0.853805 |
Target: 5'- cGUGuuuuUGGCGCACgUCGUGCGCUaccagcgcgaGCCgCa -3' miRNA: 3'- -CAUu---AUCGCGUG-AGCAUGUGG----------CGGgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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