Results 61 - 80 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6815 | 5' | -53 | NC_001875.2 | + | 53521 | 0.7 | 0.853805 |
Target: 5'- cGUGuuuuUGGCGCACgUCGUGCGCUaccagcgcgaGCCgCa -3' miRNA: 3'- -CAUu---AUCGCGUG-AGCAUGUGG----------CGGgG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 86289 | 0.7 | 0.853805 |
Target: 5'- ----gAGCGCAaaucguacaCGUGCugCGCCCUu -3' miRNA: 3'- cauuaUCGCGUga-------GCAUGugGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 99836 | 0.7 | 0.853805 |
Target: 5'- ----cAGUGCGCUgCGU-CGCCGCCgCu -3' miRNA: 3'- cauuaUCGCGUGA-GCAuGUGGCGGgG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 42702 | 0.69 | 0.861748 |
Target: 5'- ----cGGCGCGCgguuUCGUACGCaaggCGCaCCCg -3' miRNA: 3'- cauuaUCGCGUG----AGCAUGUG----GCG-GGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 36494 | 0.69 | 0.861748 |
Target: 5'- -----cGCGUGCaCGUGCGCCGCCg- -3' miRNA: 3'- cauuauCGCGUGaGCAUGUGGCGGgg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 93998 | 0.69 | 0.869471 |
Target: 5'- uGUGGUGcGCGCGCagcgugUCGUACGugaUCGCCaCCg -3' miRNA: 3'- -CAUUAU-CGCGUG------AGCAUGU---GGCGG-GG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 131003 | 0.69 | 0.869471 |
Target: 5'- -aAAUGGaCGUGCUgcacCACCGCCCCa -3' miRNA: 3'- caUUAUC-GCGUGAgcauGUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 23093 | 0.69 | 0.869471 |
Target: 5'- -----cGCGC-CgCGUGCAgCUGCCCCg -3' miRNA: 3'- cauuauCGCGuGaGCAUGU-GGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 51198 | 0.69 | 0.876968 |
Target: 5'- ----cGGCGCGgUUcugGCGCCGCCCg -3' miRNA: 3'- cauuaUCGCGUgAGca-UGUGGCGGGg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 12175 | 0.69 | 0.876968 |
Target: 5'- ----aAGC-CGCU-GUGCGCCGCCgCCg -3' miRNA: 3'- cauuaUCGcGUGAgCAUGUGGCGG-GG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 48829 | 0.69 | 0.876968 |
Target: 5'- -----cGCGCGCUacgGCGCCGCUUCa -3' miRNA: 3'- cauuauCGCGUGAgcaUGUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 37432 | 0.69 | 0.884234 |
Target: 5'- --cGUGGCGCAgUCGgcgGCcaaauaGCCGCCgCa -3' miRNA: 3'- cauUAUCGCGUgAGCa--UG------UGGCGGgG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 7948 | 0.69 | 0.884234 |
Target: 5'- ---uUAGC-CGCUCGUcguugACACCGCCa- -3' miRNA: 3'- cauuAUCGcGUGAGCA-----UGUGGCGGgg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 96895 | 0.69 | 0.884234 |
Target: 5'- --cGUGGCGUACagcuccggguugUUGUcACGCCGCaCCCa -3' miRNA: 3'- cauUAUCGCGUG------------AGCA-UGUGGCG-GGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 20043 | 0.69 | 0.884234 |
Target: 5'- ----aGGCGCcgucgGCcgCGUGCACCGCCg- -3' miRNA: 3'- cauuaUCGCG-----UGa-GCAUGUGGCGGgg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 102999 | 0.69 | 0.887075 |
Target: 5'- cGUGGUGGCGUGCggcaaGUGCGCUGCgggcgugaccacgugCCCc -3' miRNA: 3'- -CAUUAUCGCGUGag---CAUGUGGCG---------------GGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 69484 | 0.69 | 0.887075 |
Target: 5'- ---cUGGCGCGCgacccaaacugGCGCCGCgCCCa -3' miRNA: 3'- cauuAUCGCGUGagca-------UGUGGCG-GGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 94335 | 0.69 | 0.891263 |
Target: 5'- ----gGGCGCG-UCGUccGCACCGUCgCCg -3' miRNA: 3'- cauuaUCGCGUgAGCA--UGUGGCGG-GG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 33860 | 0.69 | 0.891263 |
Target: 5'- -----cGCGCAC-CGUGCGCgGCCg- -3' miRNA: 3'- cauuauCGCGUGaGCAUGUGgCGGgg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 95729 | 0.68 | 0.898052 |
Target: 5'- ----aAGUGCAUgagCG-GCGCCGCCgCCg -3' miRNA: 3'- cauuaUCGCGUGa--GCaUGUGGCGG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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