miRNA display CGI


Results 81 - 100 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 95729 0.68 0.898052
Target:  5'- ----aAGUGCAUgagCG-GCGCCGCCgCCg -3'
miRNA:   3'- cauuaUCGCGUGa--GCaUGUGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 87386 0.68 0.900698
Target:  5'- ---uUGGCGCACUgCGccgacggcgccuUGCugaucgcguucaacgACCGCCCCa -3'
miRNA:   3'- cauuAUCGCGUGA-GC------------AUG---------------UGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 82375 0.68 0.904595
Target:  5'- ----gGGCGCGCgCGgaaccacgGCGCCGUCCa -3'
miRNA:   3'- cauuaUCGCGUGaGCa-------UGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 68571 0.68 0.91089
Target:  5'- -cGGUcGCGCACcgCGUgGCGCCGCUggCCg -3'
miRNA:   3'- caUUAuCGCGUGa-GCA-UGUGGCGG--GG- -5'
6815 5' -53 NC_001875.2 + 117665 0.68 0.91089
Target:  5'- cGUA--GGCGC-UUUGcGCACgGCCCCa -3'
miRNA:   3'- -CAUuaUCGCGuGAGCaUGUGgCGGGG- -5'
6815 5' -53 NC_001875.2 + 117617 0.68 0.91089
Target:  5'- cGUA--GGCGC-UUUGcGCACgGCCCCa -3'
miRNA:   3'- -CAUuaUCGCGuGAGCaUGUGgCGGGG- -5'
6815 5' -53 NC_001875.2 + 114750 0.68 0.91089
Target:  5'- -cAGUGGCGCGCggCuUGC-CCGCCUg -3'
miRNA:   3'- caUUAUCGCGUGa-GcAUGuGGCGGGg -5'
6815 5' -53 NC_001875.2 + 91985 0.68 0.911506
Target:  5'- uGUuGUAGCGCACgcaauacccgaucagCGUguggcACACCGUgCCa -3'
miRNA:   3'- -CAuUAUCGCGUGa--------------GCA-----UGUGGCGgGG- -5'
6815 5' -53 NC_001875.2 + 86744 0.68 0.916934
Target:  5'- aUGAaGGCGCGCacgUCGgGCACCGCUa- -3'
miRNA:   3'- cAUUaUCGCGUG---AGCaUGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 40695 0.68 0.916934
Target:  5'- ----cGGCGCAUUUGga-ACCGCCgCg -3'
miRNA:   3'- cauuaUCGCGUGAGCaugUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 93063 0.68 0.916934
Target:  5'- uUGcgGGCGCGCUCu----CCGCCCa -3'
miRNA:   3'- cAUuaUCGCGUGAGcauguGGCGGGg -5'
6815 5' -53 NC_001875.2 + 28841 0.68 0.916934
Target:  5'- ----cAGCGCACUUGc-CGCaCGCCaCCa -3'
miRNA:   3'- cauuaUCGCGUGAGCauGUG-GCGG-GG- -5'
6815 5' -53 NC_001875.2 + 11078 0.68 0.922727
Target:  5'- uGgcGUGGCGCGCgcccuggacaCGgcCGCCGUCUCg -3'
miRNA:   3'- -CauUAUCGCGUGa---------GCauGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 84859 0.68 0.922727
Target:  5'- --cGUGGUGCGCUCaucgcggcuCACCGUCUCg -3'
miRNA:   3'- cauUAUCGCGUGAGcau------GUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 17704 0.67 0.928266
Target:  5'- cGUAcaAGCuGCAUUUGUACGCCaGCCa- -3'
miRNA:   3'- -CAUuaUCG-CGUGAGCAUGUGG-CGGgg -5'
6815 5' -53 NC_001875.2 + 42493 0.67 0.928266
Target:  5'- -----cGCGCACgccgucguccgCGUGCGCCGCaaagcugaggCCCg -3'
miRNA:   3'- cauuauCGCGUGa----------GCAUGUGGCG----------GGG- -5'
6815 5' -53 NC_001875.2 + 85252 0.67 0.928266
Target:  5'- -gGGUucCGCGCUCGgcgcggACACgagCGCCCCg -3'
miRNA:   3'- caUUAucGCGUGAGCa-----UGUG---GCGGGG- -5'
6815 5' -53 NC_001875.2 + 44469 0.67 0.928266
Target:  5'- ----cAGUGCGCcaagUCGUGCACCGgCgCg -3'
miRNA:   3'- cauuaUCGCGUG----AGCAUGUGGCgGgG- -5'
6815 5' -53 NC_001875.2 + 57814 0.67 0.928266
Target:  5'- ---uUAGCGCGgcaauCUUGUGCGCCGCg-- -3'
miRNA:   3'- cauuAUCGCGU-----GAGCAUGUGGCGggg -5'
6815 5' -53 NC_001875.2 + 48190 0.67 0.928266
Target:  5'- uGUGGUAuuGCGCACUUuggGCAaauGCCCCg -3'
miRNA:   3'- -CAUUAU--CGCGUGAGca-UGUgg-CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.