miRNA display CGI


Results 121 - 140 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 113080 0.67 0.9479
Target:  5'- uUGAUGGCGaCGCgCGUcaGCGCCuuaGCCgCCg -3'
miRNA:   3'- cAUUAUCGC-GUGaGCA--UGUGG---CGG-GG- -5'
6815 5' -53 NC_001875.2 + 81346 0.67 0.9479
Target:  5'- ----cGGCGCGCUgGUgccgcGCGCaCGCgCCg -3'
miRNA:   3'- cauuaUCGCGUGAgCA-----UGUG-GCGgGG- -5'
6815 5' -53 NC_001875.2 + 65760 0.67 0.9479
Target:  5'- ----cGGCGUAUUCGUGCGCgGCg-- -3'
miRNA:   3'- cauuaUCGCGUGAGCAUGUGgCGggg -5'
6815 5' -53 NC_001875.2 + 116038 0.66 0.952185
Target:  5'- uUGGUGGUGCA---GUAC-CCGCCCa -3'
miRNA:   3'- cAUUAUCGCGUgagCAUGuGGCGGGg -5'
6815 5' -53 NC_001875.2 + 26222 0.66 0.952185
Target:  5'- -----uGCGCACcacaCGUGCaACCGCUCUu -3'
miRNA:   3'- cauuauCGCGUGa---GCAUG-UGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 4888 0.66 0.952185
Target:  5'- -----cGUGCGCUCGUGuCGCCGgcaUCCUg -3'
miRNA:   3'- cauuauCGCGUGAGCAU-GUGGC---GGGG- -5'
6815 5' -53 NC_001875.2 + 60107 0.66 0.952185
Target:  5'- cGUAGacGUGuCGCUCGUuuACGCUGCCgCa -3'
miRNA:   3'- -CAUUauCGC-GUGAGCA--UGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 88237 0.66 0.952185
Target:  5'- ----cGGCGCAagcggCGcGCGCCGCCgCu -3'
miRNA:   3'- cauuaUCGCGUga---GCaUGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 10881 0.66 0.952185
Target:  5'- uGUAAUAGUGCAa--GUACGCgUGCUCa -3'
miRNA:   3'- -CAUUAUCGCGUgagCAUGUG-GCGGGg -5'
6815 5' -53 NC_001875.2 + 30959 0.66 0.952185
Target:  5'- --cAUGGCGCccACgcgCGcGCugCGCCUCg -3'
miRNA:   3'- cauUAUCGCG--UGa--GCaUGugGCGGGG- -5'
6815 5' -53 NC_001875.2 + 33224 0.66 0.952185
Target:  5'- ----gGGCGCggGCUCGccggGCGCCGUUUCg -3'
miRNA:   3'- cauuaUCGCG--UGAGCa---UGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 33671 0.66 0.955834
Target:  5'- ----cGGCGUgguaaaacaaacgGCccgaCGUGCGCCGCCCg -3'
miRNA:   3'- cauuaUCGCG-------------UGa---GCAUGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 5512 0.66 0.956227
Target:  5'- ----cGGCGCACgcgCGcaguuUACGCCgGCCgCCg -3'
miRNA:   3'- cauuaUCGCGUGa--GC-----AUGUGG-CGG-GG- -5'
6815 5' -53 NC_001875.2 + 41916 0.66 0.956227
Target:  5'- -aAGUGGCcCGCggacGCGCCGCCCUu -3'
miRNA:   3'- caUUAUCGcGUGagcaUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 54546 0.66 0.956227
Target:  5'- ----cGGCGUACUgcugaaacaUGUACugCGCCgCg -3'
miRNA:   3'- cauuaUCGCGUGA---------GCAUGugGCGGgG- -5'
6815 5' -53 NC_001875.2 + 80131 0.66 0.956227
Target:  5'- -gGGUcGuCGCACUCGUGCGCguCGCUgCu -3'
miRNA:   3'- caUUAuC-GCGUGAGCAUGUG--GCGGgG- -5'
6815 5' -53 NC_001875.2 + 89482 0.66 0.956227
Target:  5'- -aAGUGGCGCcCUC--GCGCCGCaaCCg -3'
miRNA:   3'- caUUAUCGCGuGAGcaUGUGGCGg-GG- -5'
6815 5' -53 NC_001875.2 + 128843 0.66 0.956227
Target:  5'- -----cGCGCACUUcaAC-CCGCCCg -3'
miRNA:   3'- cauuauCGCGUGAGcaUGuGGCGGGg -5'
6815 5' -53 NC_001875.2 + 66919 0.66 0.956227
Target:  5'- -aAAUGGCGCACaaugUCGU-CGUCGCUCUg -3'
miRNA:   3'- caUUAUCGCGUG----AGCAuGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 124756 0.66 0.956227
Target:  5'- -----cGCGCACguaGUAgcUGCCGCCCg -3'
miRNA:   3'- cauuauCGCGUGag-CAU--GUGGCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.