Results 81 - 100 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6815 | 5' | -53 | NC_001875.2 | + | 84859 | 0.68 | 0.922727 |
Target: 5'- --cGUGGUGCGCUCaucgcggcuCACCGUCUCg -3' miRNA: 3'- cauUAUCGCGUGAGcau------GUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 28841 | 0.68 | 0.916934 |
Target: 5'- ----cAGCGCACUUGc-CGCaCGCCaCCa -3' miRNA: 3'- cauuaUCGCGUGAGCauGUG-GCGG-GG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 93063 | 0.68 | 0.916934 |
Target: 5'- uUGcgGGCGCGCUCu----CCGCCCa -3' miRNA: 3'- cAUuaUCGCGUGAGcauguGGCGGGg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 40695 | 0.68 | 0.916934 |
Target: 5'- ----cGGCGCAUUUGga-ACCGCCgCg -3' miRNA: 3'- cauuaUCGCGUGAGCaugUGGCGGgG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 86744 | 0.68 | 0.916934 |
Target: 5'- aUGAaGGCGCGCacgUCGgGCACCGCUa- -3' miRNA: 3'- cAUUaUCGCGUG---AGCaUGUGGCGGgg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 91985 | 0.68 | 0.911506 |
Target: 5'- uGUuGUAGCGCACgcaauacccgaucagCGUguggcACACCGUgCCa -3' miRNA: 3'- -CAuUAUCGCGUGa--------------GCA-----UGUGGCGgGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 117665 | 0.68 | 0.91089 |
Target: 5'- cGUA--GGCGC-UUUGcGCACgGCCCCa -3' miRNA: 3'- -CAUuaUCGCGuGAGCaUGUGgCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 117617 | 0.68 | 0.91089 |
Target: 5'- cGUA--GGCGC-UUUGcGCACgGCCCCa -3' miRNA: 3'- -CAUuaUCGCGuGAGCaUGUGgCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 114750 | 0.68 | 0.91089 |
Target: 5'- -cAGUGGCGCGCggCuUGC-CCGCCUg -3' miRNA: 3'- caUUAUCGCGUGa-GcAUGuGGCGGGg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 68571 | 0.68 | 0.91089 |
Target: 5'- -cGGUcGCGCACcgCGUgGCGCCGCUggCCg -3' miRNA: 3'- caUUAuCGCGUGa-GCA-UGUGGCGG--GG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 82375 | 0.68 | 0.904595 |
Target: 5'- ----gGGCGCGCgCGgaaccacgGCGCCGUCCa -3' miRNA: 3'- cauuaUCGCGUGaGCa-------UGUGGCGGGg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 87386 | 0.68 | 0.900698 |
Target: 5'- ---uUGGCGCACUgCGccgacggcgccuUGCugaucgcguucaacgACCGCCCCa -3' miRNA: 3'- cauuAUCGCGUGA-GC------------AUG---------------UGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 96192 | 0.68 | 0.898052 |
Target: 5'- cUGAUGgccGCGCACUUGcGCugCGCCa- -3' miRNA: 3'- cAUUAU---CGCGUGAGCaUGugGCGGgg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 95729 | 0.68 | 0.898052 |
Target: 5'- ----aAGUGCAUgagCG-GCGCCGCCgCCg -3' miRNA: 3'- cauuaUCGCGUGa--GCaUGUGGCGG-GG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 33860 | 0.69 | 0.891263 |
Target: 5'- -----cGCGCAC-CGUGCGCgGCCg- -3' miRNA: 3'- cauuauCGCGUGaGCAUGUGgCGGgg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 94335 | 0.69 | 0.891263 |
Target: 5'- ----gGGCGCG-UCGUccGCACCGUCgCCg -3' miRNA: 3'- cauuaUCGCGUgAGCA--UGUGGCGG-GG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 69484 | 0.69 | 0.887075 |
Target: 5'- ---cUGGCGCGCgacccaaacugGCGCCGCgCCCa -3' miRNA: 3'- cauuAUCGCGUGagca-------UGUGGCG-GGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 102999 | 0.69 | 0.887075 |
Target: 5'- cGUGGUGGCGUGCggcaaGUGCGCUGCgggcgugaccacgugCCCc -3' miRNA: 3'- -CAUUAUCGCGUGag---CAUGUGGCG---------------GGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 96895 | 0.69 | 0.884234 |
Target: 5'- --cGUGGCGUACagcuccggguugUUGUcACGCCGCaCCCa -3' miRNA: 3'- cauUAUCGCGUG------------AGCA-UGUGGCG-GGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 7948 | 0.69 | 0.884234 |
Target: 5'- ---uUAGC-CGCUCGUcguugACACCGCCa- -3' miRNA: 3'- cauuAUCGcGUGAGCA-----UGUGGCGGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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