Results 101 - 120 of 173 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6815 | 5' | -53 | NC_001875.2 | + | 7948 | 0.69 | 0.884234 |
Target: 5'- ---uUAGC-CGCUCGUcguugACACCGCCa- -3' miRNA: 3'- cauuAUCGcGUGAGCA-----UGUGGCGGgg -5' |
|||||||
6815 | 5' | -53 | NC_001875.2 | + | 20043 | 0.69 | 0.884234 |
Target: 5'- ----aGGCGCcgucgGCcgCGUGCACCGCCg- -3' miRNA: 3'- cauuaUCGCG-----UGa-GCAUGUGGCGGgg -5' |
|||||||
6815 | 5' | -53 | NC_001875.2 | + | 51198 | 0.69 | 0.876968 |
Target: 5'- ----cGGCGCGgUUcugGCGCCGCCCg -3' miRNA: 3'- cauuaUCGCGUgAGca-UGUGGCGGGg -5' |
|||||||
6815 | 5' | -53 | NC_001875.2 | + | 48829 | 0.69 | 0.876968 |
Target: 5'- -----cGCGCGCUacgGCGCCGCUUCa -3' miRNA: 3'- cauuauCGCGUGAgcaUGUGGCGGGG- -5' |
|||||||
6815 | 5' | -53 | NC_001875.2 | + | 12175 | 0.69 | 0.876968 |
Target: 5'- ----aAGC-CGCU-GUGCGCCGCCgCCg -3' miRNA: 3'- cauuaUCGcGUGAgCAUGUGGCGG-GG- -5' |
|||||||
6815 | 5' | -53 | NC_001875.2 | + | 93998 | 0.69 | 0.869471 |
Target: 5'- uGUGGUGcGCGCGCagcgugUCGUACGugaUCGCCaCCg -3' miRNA: 3'- -CAUUAU-CGCGUG------AGCAUGU---GGCGG-GG- -5' |
|||||||
6815 | 5' | -53 | NC_001875.2 | + | 23093 | 0.69 | 0.869471 |
Target: 5'- -----cGCGC-CgCGUGCAgCUGCCCCg -3' miRNA: 3'- cauuauCGCGuGaGCAUGU-GGCGGGG- -5' |
|||||||
6815 | 5' | -53 | NC_001875.2 | + | 131003 | 0.69 | 0.869471 |
Target: 5'- -aAAUGGaCGUGCUgcacCACCGCCCCa -3' miRNA: 3'- caUUAUC-GCGUGAgcauGUGGCGGGG- -5' |
|||||||
6815 | 5' | -53 | NC_001875.2 | + | 42702 | 0.69 | 0.861748 |
Target: 5'- ----cGGCGCGCgguuUCGUACGCaaggCGCaCCCg -3' miRNA: 3'- cauuaUCGCGUG----AGCAUGUG----GCG-GGG- -5' |
|||||||
6815 | 5' | -53 | NC_001875.2 | + | 36494 | 0.69 | 0.861748 |
Target: 5'- -----cGCGUGCaCGUGCGCCGCCg- -3' miRNA: 3'- cauuauCGCGUGaGCAUGUGGCGGgg -5' |
|||||||
6815 | 5' | -53 | NC_001875.2 | + | 68309 | 0.7 | 0.853805 |
Target: 5'- ----aGGUGUACUCGUugGCuCGCCa- -3' miRNA: 3'- cauuaUCGCGUGAGCAugUG-GCGGgg -5' |
|||||||
6815 | 5' | -53 | NC_001875.2 | + | 86289 | 0.7 | 0.853805 |
Target: 5'- ----gAGCGCAaaucguacaCGUGCugCGCCCUu -3' miRNA: 3'- cauuaUCGCGUga-------GCAUGugGCGGGG- -5' |
|||||||
6815 | 5' | -53 | NC_001875.2 | + | 99836 | 0.7 | 0.853805 |
Target: 5'- ----cAGUGCGCUgCGU-CGCCGCCgCu -3' miRNA: 3'- cauuaUCGCGUGA-GCAuGUGGCGGgG- -5' |
|||||||
6815 | 5' | -53 | NC_001875.2 | + | 22726 | 0.7 | 0.853805 |
Target: 5'- --uGUGGCcUACUUGUGCGCCGgCCa -3' miRNA: 3'- cauUAUCGcGUGAGCAUGUGGCgGGg -5' |
|||||||
6815 | 5' | -53 | NC_001875.2 | + | 53521 | 0.7 | 0.853805 |
Target: 5'- cGUGuuuuUGGCGCACgUCGUGCGCUaccagcgcgaGCCgCa -3' miRNA: 3'- -CAUu---AUCGCGUG-AGCAUGUGG----------CGGgG- -5' |
|||||||
6815 | 5' | -53 | NC_001875.2 | + | 94615 | 0.7 | 0.852999 |
Target: 5'- --uGUAGCGCggcagcgGCUUGcUGCACCGCUgCg -3' miRNA: 3'- cauUAUCGCG-------UGAGC-AUGUGGCGGgG- -5' |
|||||||
6815 | 5' | -53 | NC_001875.2 | + | 72947 | 0.7 | 0.84565 |
Target: 5'- --cGUAGCGCGCguucgCGgccugcaaACGCUGCUCCg -3' miRNA: 3'- cauUAUCGCGUGa----GCa-------UGUGGCGGGG- -5' |
|||||||
6815 | 5' | -53 | NC_001875.2 | + | 14942 | 0.7 | 0.84565 |
Target: 5'- -gGAUGGCGUugGCgUCGUGCACCucauaCCCUg -3' miRNA: 3'- caUUAUCGCG--UG-AGCAUGUGGc----GGGG- -5' |
|||||||
6815 | 5' | -53 | NC_001875.2 | + | 78314 | 0.7 | 0.84565 |
Target: 5'- cUGGUAGCGCACgaCGUGCGCCaaaaacacgcGCaCCg -3' miRNA: 3'- cAUUAUCGCGUGa-GCAUGUGG----------CGgGG- -5' |
|||||||
6815 | 5' | -53 | NC_001875.2 | + | 113285 | 0.7 | 0.837289 |
Target: 5'- ----aAGCGCGCUCaagACACCcacGCCCa -3' miRNA: 3'- cauuaUCGCGUGAGca-UGUGG---CGGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home