miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 30959 0.66 0.952185
Target:  5'- --cAUGGCGCccACgcgCGcGCugCGCCUCg -3'
miRNA:   3'- cauUAUCGCG--UGa--GCaUGugGCGGGG- -5'
6815 5' -53 NC_001875.2 + 31682 0.67 0.9479
Target:  5'- ----cAGCGUGCcggCGUGgACCGCCgCu -3'
miRNA:   3'- cauuaUCGCGUGa--GCAUgUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 33031 0.67 0.938586
Target:  5'- ----aAGCGCAgcgCGgcggGCGCCGCgCCg -3'
miRNA:   3'- cauuaUCGCGUga-GCa---UGUGGCGgGG- -5'
6815 5' -53 NC_001875.2 + 33224 0.66 0.952185
Target:  5'- ----gGGCGCggGCUCGccggGCGCCGUUUCg -3'
miRNA:   3'- cauuaUCGCG--UGAGCa---UGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 33671 0.66 0.955834
Target:  5'- ----cGGCGUgguaaaacaaacgGCccgaCGUGCGCCGCCCg -3'
miRNA:   3'- cauuaUCGCG-------------UGa---GCAUGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 33860 0.69 0.891263
Target:  5'- -----cGCGCAC-CGUGCGCgGCCg- -3'
miRNA:   3'- cauuauCGCGUGaGCAUGUGgCGGgg -5'
6815 5' -53 NC_001875.2 + 34683 0.66 0.970058
Target:  5'- ----gGGCuGCGCgUCaaGgGCCGCCCCa -3'
miRNA:   3'- cauuaUCG-CGUG-AGcaUgUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 36494 0.69 0.861748
Target:  5'- -----cGCGUGCaCGUGCGCCGCCg- -3'
miRNA:   3'- cauuauCGCGUGaGCAUGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 36541 0.7 0.837289
Target:  5'- ----cGGCGCuggCGcGCACCGUCCCc -3'
miRNA:   3'- cauuaUCGCGugaGCaUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 37361 0.73 0.661898
Target:  5'- -----cGCGCGCUCGUgcgaacgcgcGCGCCGCUgCa -3'
miRNA:   3'- cauuauCGCGUGAGCA----------UGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 37432 0.69 0.884234
Target:  5'- --cGUGGCGCAgUCGgcgGCcaaauaGCCGCCgCa -3'
miRNA:   3'- cauUAUCGCGUgAGCa--UG------UGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 38115 0.66 0.96694
Target:  5'- ----gAGCGCAgUCG-ACuaaGCUGUCCCu -3'
miRNA:   3'- cauuaUCGCGUgAGCaUG---UGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 38410 0.67 0.943367
Target:  5'- -cGAUGaaGCACUCGccgUGCAgCGCCUCu -3'
miRNA:   3'- caUUAUcgCGUGAGC---AUGUgGCGGGG- -5'
6815 5' -53 NC_001875.2 + 40695 0.68 0.916934
Target:  5'- ----cGGCGCAUUUGga-ACCGCCgCg -3'
miRNA:   3'- cauuaUCGCGUGAGCaugUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 41916 0.66 0.956227
Target:  5'- -aAGUGGCcCGCggacGCGCCGCCCUu -3'
miRNA:   3'- caUUAUCGcGUGagcaUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 42493 0.67 0.928266
Target:  5'- -----cGCGCACgccgucguccgCGUGCGCCGCaaagcugaggCCCg -3'
miRNA:   3'- cauuauCGCGUGa----------GCAUGUGGCG----------GGG- -5'
6815 5' -53 NC_001875.2 + 42583 0.67 0.937102
Target:  5'- ----cGGCGCACgcgcgCGUcagcucggcgcuggGCACCGCCa- -3'
miRNA:   3'- cauuaUCGCGUGa----GCA--------------UGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 42702 0.69 0.861748
Target:  5'- ----cGGCGCGCgguuUCGUACGCaaggCGCaCCCg -3'
miRNA:   3'- cauuaUCGCGUG----AGCAUGUG----GCG-GGG- -5'
6815 5' -53 NC_001875.2 + 43714 0.67 0.938586
Target:  5'- ---uUGGCGcCGCUCa-GCACCGUgCCCg -3'
miRNA:   3'- cauuAUCGC-GUGAGcaUGUGGCG-GGG- -5'
6815 5' -53 NC_001875.2 + 44469 0.67 0.928266
Target:  5'- ----cAGUGCGCcaagUCGUGCACCGgCgCg -3'
miRNA:   3'- cauuaUCGCGUG----AGCAUGUGGCgGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.