miRNA display CGI


Results 81 - 100 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 56252 0.7 0.828731
Target:  5'- ----cGGCGCGCggcugcaGUACuuuGCCGCCCUc -3'
miRNA:   3'- cauuaUCGCGUGag-----CAUG---UGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 56815 0.66 0.956227
Target:  5'- -----cGCGUACUCGUuCACgGCCg- -3'
miRNA:   3'- cauuauCGCGUGAGCAuGUGgCGGgg -5'
6815 5' -53 NC_001875.2 + 56942 1.13 0.0025
Target:  5'- cGUAAUAGCGCACUCGUACACCGCCCCg -3'
miRNA:   3'- -CAUUAUCGCGUGAGCAUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 57814 0.67 0.928266
Target:  5'- ---uUAGCGCGgcaauCUUGUGCGCCGCg-- -3'
miRNA:   3'- cauuAUCGCGU-----GAGCAUGUGGCGggg -5'
6815 5' -53 NC_001875.2 + 58044 0.7 0.837289
Target:  5'- ----cGGCGCGCUgcCGUuccaGCCGCCgCCg -3'
miRNA:   3'- cauuaUCGCGUGA--GCAug--UGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 60107 0.66 0.952185
Target:  5'- cGUAGacGUGuCGCUCGUuuACGCUGCCgCa -3'
miRNA:   3'- -CAUUauCGC-GUGAGCA--UGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 62604 0.7 0.837289
Target:  5'- ----cAGCGCGC-CGUucgACGCCGCCg- -3'
miRNA:   3'- cauuaUCGCGUGaGCA---UGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 62833 0.66 0.956227
Target:  5'- ----cAGCGCGCcaccaCGUGC-UUGCCCCc -3'
miRNA:   3'- cauuaUCGCGUGa----GCAUGuGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 62977 0.74 0.630326
Target:  5'- uGUAGUugucGGgGCACUCGcGCACCGCgugcgaCCCg -3'
miRNA:   3'- -CAUUA----UCgCGUGAGCaUGUGGCG------GGG- -5'
6815 5' -53 NC_001875.2 + 63896 0.75 0.577841
Target:  5'- aGUAAgaAGCGCGC-CGUgGCGCCGCCgCa -3'
miRNA:   3'- -CAUUa-UCGCGUGaGCA-UGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 65760 0.67 0.9479
Target:  5'- ----cGGCGUAUUCGUGCGCgGCg-- -3'
miRNA:   3'- cauuaUCGCGUGAGCAUGUGgCGggg -5'
6815 5' -53 NC_001875.2 + 66115 0.66 0.956227
Target:  5'- ----cGGCGgGCggCGaggcgGCGCCGCCCg -3'
miRNA:   3'- cauuaUCGCgUGa-GCa----UGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 66635 0.66 0.960031
Target:  5'- uGUGcaAGCGCauGCUgGaGCugCGCUCCg -3'
miRNA:   3'- -CAUuaUCGCG--UGAgCaUGugGCGGGG- -5'
6815 5' -53 NC_001875.2 + 66919 0.66 0.956227
Target:  5'- -aAAUGGCGCACaaugUCGU-CGUCGCUCUg -3'
miRNA:   3'- caUUAUCGCGUG----AGCAuGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 67082 0.67 0.938586
Target:  5'- cGUAAUcGGUGCACUUGUuguaccagaucGCuuCGCCCa -3'
miRNA:   3'- -CAUUA-UCGCGUGAGCA-----------UGugGCGGGg -5'
6815 5' -53 NC_001875.2 + 67799 0.66 0.958914
Target:  5'- aGUAAUAGCucGCugUCGUauuuaaucuuguucACGCuCGUCCa -3'
miRNA:   3'- -CAUUAUCG--CGugAGCA--------------UGUG-GCGGGg -5'
6815 5' -53 NC_001875.2 + 67887 0.66 0.9636
Target:  5'- ----cAGCGCGgUCGgcgACAgCGCCUUc -3'
miRNA:   3'- cauuaUCGCGUgAGCa--UGUgGCGGGG- -5'
6815 5' -53 NC_001875.2 + 68151 0.76 0.486466
Target:  5'- -----cGCGCAcCUCGUGCG-CGCCCCu -3'
miRNA:   3'- cauuauCGCGU-GAGCAUGUgGCGGGG- -5'
6815 5' -53 NC_001875.2 + 68309 0.7 0.853805
Target:  5'- ----aGGUGUACUCGUugGCuCGCCa- -3'
miRNA:   3'- cauuaUCGCGUGAGCAugUG-GCGGgg -5'
6815 5' -53 NC_001875.2 + 68571 0.68 0.91089
Target:  5'- -cGGUcGCGCACcgCGUgGCGCCGCUggCCg -3'
miRNA:   3'- caUUAuCGCGUGa-GCA-UGUGGCGG--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.