miRNA display CGI


Results 101 - 120 of 173 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 68852 0.71 0.801953
Target:  5'- ----gGGuCGCACgCGUGCGCgagUGCCCCg -3'
miRNA:   3'- cauuaUC-GCGUGaGCAUGUG---GCGGGG- -5'
6815 5' -53 NC_001875.2 + 69484 0.69 0.887075
Target:  5'- ---cUGGCGCGCgacccaaacugGCGCCGCgCCCa -3'
miRNA:   3'- cauuAUCGCGUGagca-------UGUGGCG-GGG- -5'
6815 5' -53 NC_001875.2 + 70726 0.66 0.970058
Target:  5'- ---uUGGC-CACgCGUcaACGCCaGCCCCu -3'
miRNA:   3'- cauuAUCGcGUGaGCA--UGUGG-CGGGG- -5'
6815 5' -53 NC_001875.2 + 71602 0.76 0.526368
Target:  5'- ---cUAGCGCGCUCGUGC-UCGCCa- -3'
miRNA:   3'- cauuAUCGCGUGAGCAUGuGGCGGgg -5'
6815 5' -53 NC_001875.2 + 72947 0.7 0.84565
Target:  5'- --cGUAGCGCGCguucgCGgccugcaaACGCUGCUCCg -3'
miRNA:   3'- cauUAUCGCGUGa----GCa-------UGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 73981 0.7 0.811054
Target:  5'- ----aAGCGUGCUC--AUACCGCUCCa -3'
miRNA:   3'- cauuaUCGCGUGAGcaUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 77494 0.71 0.762062
Target:  5'- gGUAccAGCGCGCgcauuccuucaaCGUGCACUuuuGCCCCa -3'
miRNA:   3'- -CAUuaUCGCGUGa-----------GCAUGUGG---CGGGG- -5'
6815 5' -53 NC_001875.2 + 78314 0.7 0.84565
Target:  5'- cUGGUAGCGCACgaCGUGCGCCaaaaacacgcGCaCCg -3'
miRNA:   3'- cAUUAUCGCGUGa-GCAUGUGG----------CGgGG- -5'
6815 5' -53 NC_001875.2 + 79874 0.66 0.960031
Target:  5'- cGUGGUccacGCGCGCgCGUGCGgcacgUCGCgCCCa -3'
miRNA:   3'- -CAUUAu---CGCGUGaGCAUGU-----GGCG-GGG- -5'
6815 5' -53 NC_001875.2 + 80131 0.66 0.956227
Target:  5'- -gGGUcGuCGCACUCGUGCGCguCGCUgCu -3'
miRNA:   3'- caUUAuC-GCGUGAGCAUGUG--GCGGgG- -5'
6815 5' -53 NC_001875.2 + 81346 0.67 0.9479
Target:  5'- ----cGGCGCGCUgGUgccgcGCGCaCGCgCCg -3'
miRNA:   3'- cauuaUCGCGUGAgCA-----UGUG-GCGgGG- -5'
6815 5' -53 NC_001875.2 + 82198 0.66 0.9636
Target:  5'- ----gGGCGCcggcggccGCUCGUGuCGCCGCUg- -3'
miRNA:   3'- cauuaUCGCG--------UGAGCAU-GUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 82375 0.68 0.904595
Target:  5'- ----gGGCGCGCgCGgaaccacgGCGCCGUCCa -3'
miRNA:   3'- cauuaUCGCGUGaGCa-------UGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 82963 0.66 0.970058
Target:  5'- ----gGGCGCGucCUCG-GCgACCGaCCCCu -3'
miRNA:   3'- cauuaUCGCGU--GAGCaUG-UGGC-GGGG- -5'
6815 5' -53 NC_001875.2 + 84133 0.73 0.661898
Target:  5'- ----cAGCagGCAgUCGUGCACuUGCCCCg -3'
miRNA:   3'- cauuaUCG--CGUgAGCAUGUG-GCGGGG- -5'
6815 5' -53 NC_001875.2 + 84859 0.68 0.922727
Target:  5'- --cGUGGUGCGCUCaucgcggcuCACCGUCUCg -3'
miRNA:   3'- cauUAUCGCGUGAGcau------GUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 85252 0.67 0.928266
Target:  5'- -gGGUucCGCGCUCGgcgcggACACgagCGCCCCg -3'
miRNA:   3'- caUUAucGCGUGAGCa-----UGUG---GCGGGG- -5'
6815 5' -53 NC_001875.2 + 86289 0.7 0.853805
Target:  5'- ----gAGCGCAaaucguacaCGUGCugCGCCCUu -3'
miRNA:   3'- cauuaUCGCGUga-------GCAUGugGCGGGG- -5'
6815 5' -53 NC_001875.2 + 86744 0.68 0.916934
Target:  5'- aUGAaGGCGCGCacgUCGgGCACCGCUa- -3'
miRNA:   3'- cAUUaUCGCGUG---AGCaUGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 87386 0.68 0.900698
Target:  5'- ---uUGGCGCACUgCGccgacggcgccuUGCugaucgcguucaacgACCGCCCCa -3'
miRNA:   3'- cauuAUCGCGUGA-GC------------AUG---------------UGGCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.