miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 111190 0.66 0.960031
Target:  5'- ----gGGCGCGCUgGgcgGCGCgCGCCg- -3'
miRNA:   3'- cauuaUCGCGUGAgCa--UGUG-GCGGgg -5'
6815 5' -53 NC_001875.2 + 110821 0.73 0.693241
Target:  5'- -aGGUGGaCGCGCUgGUGCGCCGCg-- -3'
miRNA:   3'- caUUAUC-GCGUGAgCAUGUGGCGggg -5'
6815 5' -53 NC_001875.2 + 110568 0.66 0.9636
Target:  5'- -cAAUGuCGUGCUCGUA-GCCGCgCCg -3'
miRNA:   3'- caUUAUcGCGUGAGCAUgUGGCGgGG- -5'
6815 5' -53 NC_001875.2 + 110347 0.67 0.943367
Target:  5'- ----gGGCuGCACUCG-GCGUCGCCCg -3'
miRNA:   3'- cauuaUCG-CGUGAGCaUGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 110170 0.66 0.9636
Target:  5'- -gAGU-GCGCGCUUGgcCuCCGCCUUg -3'
miRNA:   3'- caUUAuCGCGUGAGCauGuGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 105470 0.66 0.970058
Target:  5'- -----uGCGCACUguuuugcggccgCGUACAUgGCCaCCu -3'
miRNA:   3'- cauuauCGCGUGA------------GCAUGUGgCGG-GG- -5'
6815 5' -53 NC_001875.2 + 102999 0.69 0.887075
Target:  5'- cGUGGUGGCGUGCggcaaGUGCGCUGCgggcgugaccacgugCCCc -3'
miRNA:   3'- -CAUUAUCGCGUGag---CAUGUGGCG---------------GGG- -5'
6815 5' -53 NC_001875.2 + 100910 0.66 0.960031
Target:  5'- ----cAGCGCGCggagacgCGU-CGCCGCgCUCg -3'
miRNA:   3'- cauuaUCGCGUGa------GCAuGUGGCG-GGG- -5'
6815 5' -53 NC_001875.2 + 99836 0.7 0.853805
Target:  5'- ----cAGUGCGCUgCGU-CGCCGCCgCu -3'
miRNA:   3'- cauuaUCGCGUGA-GCAuGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 97744 0.73 0.672384
Target:  5'- -----cGCGCGCUCGUGCAa--CCCCg -3'
miRNA:   3'- cauuauCGCGUGAGCAUGUggcGGGG- -5'
6815 5' -53 NC_001875.2 + 96895 0.69 0.884234
Target:  5'- --cGUGGCGUACagcuccggguugUUGUcACGCCGCaCCCa -3'
miRNA:   3'- cauUAUCGCGUG------------AGCA-UGUGGCG-GGG- -5'
6815 5' -53 NC_001875.2 + 96192 0.68 0.898052
Target:  5'- cUGAUGgccGCGCACUUGcGCugCGCCa- -3'
miRNA:   3'- cAUUAU---CGCGUGAGCaUGugGCGGgg -5'
6815 5' -53 NC_001875.2 + 95729 0.68 0.898052
Target:  5'- ----aAGUGCAUgagCG-GCGCCGCCgCCg -3'
miRNA:   3'- cauuaUCGCGUGa--GCaUGUGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 94615 0.7 0.852999
Target:  5'- --uGUAGCGCggcagcgGCUUGcUGCACCGCUgCg -3'
miRNA:   3'- cauUAUCGCG-------UGAGC-AUGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 94335 0.69 0.891263
Target:  5'- ----gGGCGCG-UCGUccGCACCGUCgCCg -3'
miRNA:   3'- cauuaUCGCGUgAGCA--UGUGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 93998 0.69 0.869471
Target:  5'- uGUGGUGcGCGCGCagcgugUCGUACGugaUCGCCaCCg -3'
miRNA:   3'- -CAUUAU-CGCGUG------AGCAUGU---GGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 93202 0.67 0.943367
Target:  5'- ----cAGCGCGCaauacgcggCGU-CACUGUCCCa -3'
miRNA:   3'- cauuaUCGCGUGa--------GCAuGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 93063 0.68 0.916934
Target:  5'- uUGcgGGCGCGCUCu----CCGCCCa -3'
miRNA:   3'- cAUuaUCGCGUGAGcauguGGCGGGg -5'
6815 5' -53 NC_001875.2 + 92786 0.75 0.567437
Target:  5'- -cAAUGGCcauGCGCUUgcgGUACAgCGCCCCg -3'
miRNA:   3'- caUUAUCG---CGUGAG---CAUGUgGCGGGG- -5'
6815 5' -53 NC_001875.2 + 92761 0.74 0.60927
Target:  5'- ---uUGGCGUAUUCGUaaACGCCGCCa- -3'
miRNA:   3'- cauuAUCGCGUGAGCA--UGUGGCGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.