miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 92650 0.71 0.791754
Target:  5'- uGUAGcGGCGCAC-CGUAaacgccacgcaacCGCCGgCCCg -3'
miRNA:   3'- -CAUUaUCGCGUGaGCAU-------------GUGGCgGGG- -5'
6815 5' -53 NC_001875.2 + 92555 0.72 0.713882
Target:  5'- -----cGCGCACUUGgugucgGCgggcagaaGCCGCCCCg -3'
miRNA:   3'- cauuauCGCGUGAGCa-----UG--------UGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 92500 0.73 0.682835
Target:  5'- cGUGAUgGGCGCaaaacgggcGCUCGUGCG-CGCCCg -3'
miRNA:   3'- -CAUUA-UCGCG---------UGAGCAUGUgGCGGGg -5'
6815 5' -53 NC_001875.2 + 91985 0.68 0.911506
Target:  5'- uGUuGUAGCGCACgcaauacccgaucagCGUguggcACACCGUgCCa -3'
miRNA:   3'- -CAuUAUCGCGUGa--------------GCA-----UGUGGCGgGG- -5'
6815 5' -53 NC_001875.2 + 90967 0.71 0.76304
Target:  5'- -----cGCGCACgcgauuuUCGUGCGCCGUuugCCCa -3'
miRNA:   3'- cauuauCGCGUG-------AGCAUGUGGCG---GGG- -5'
6815 5' -53 NC_001875.2 + 89769 0.66 0.966616
Target:  5'- aUGGUGGUcggcgacGCGCUCGUGCACgUGCgCg -3'
miRNA:   3'- cAUUAUCG-------CGUGAGCAUGUG-GCGgGg -5'
6815 5' -53 NC_001875.2 + 89533 0.71 0.801953
Target:  5'- ----gGGCGCGCUCGaucuguacuugGCGCCGCgggugCCCa -3'
miRNA:   3'- cauuaUCGCGUGAGCa----------UGUGGCG-----GGG- -5'
6815 5' -53 NC_001875.2 + 89482 0.66 0.956227
Target:  5'- -aAGUGGCGCcCUC--GCGCCGCaaCCg -3'
miRNA:   3'- caUUAUCGCGuGAGcaUGUGGCGg-GG- -5'
6815 5' -53 NC_001875.2 + 89296 0.73 0.682835
Target:  5'- uGUAGUGGcCGCAUg---GCGCCGCCaCCa -3'
miRNA:   3'- -CAUUAUC-GCGUGagcaUGUGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 88505 0.66 0.96694
Target:  5'- aGUAcGUGGUGCGCggCGgcaaccACGCCGaCCCg -3'
miRNA:   3'- -CAU-UAUCGCGUGa-GCa-----UGUGGCgGGG- -5'
6815 5' -53 NC_001875.2 + 88265 0.75 0.567437
Target:  5'- -----cGcCGUACUCGUcagacgaagaagACGCCGCCCCg -3'
miRNA:   3'- cauuauC-GCGUGAGCA------------UGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 88237 0.66 0.952185
Target:  5'- ----cGGCGCAagcggCGcGCGCCGCCgCu -3'
miRNA:   3'- cauuaUCGCGUga---GCaUGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 87694 0.67 0.943367
Target:  5'- ----gAGCG-ACgaCGUGCGCUGCCUCa -3'
miRNA:   3'- cauuaUCGCgUGa-GCAUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 87386 0.68 0.900698
Target:  5'- ---uUGGCGCACUgCGccgacggcgccuUGCugaucgcguucaacgACCGCCCCa -3'
miRNA:   3'- cauuAUCGCGUGA-GC------------AUG---------------UGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 86744 0.68 0.916934
Target:  5'- aUGAaGGCGCGCacgUCGgGCACCGCUa- -3'
miRNA:   3'- cAUUaUCGCGUG---AGCaUGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 86289 0.7 0.853805
Target:  5'- ----gAGCGCAaaucguacaCGUGCugCGCCCUu -3'
miRNA:   3'- cauuaUCGCGUga-------GCAUGugGCGGGG- -5'
6815 5' -53 NC_001875.2 + 85252 0.67 0.928266
Target:  5'- -gGGUucCGCGCUCGgcgcggACACgagCGCCCCg -3'
miRNA:   3'- caUUAucGCGUGAGCa-----UGUG---GCGGGG- -5'
6815 5' -53 NC_001875.2 + 84859 0.68 0.922727
Target:  5'- --cGUGGUGCGCUCaucgcggcuCACCGUCUCg -3'
miRNA:   3'- cauUAUCGCGUGAGcau------GUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 84133 0.73 0.661898
Target:  5'- ----cAGCagGCAgUCGUGCACuUGCCCCg -3'
miRNA:   3'- cauuaUCG--CGUgAGCAUGUG-GCGGGG- -5'
6815 5' -53 NC_001875.2 + 82963 0.66 0.970058
Target:  5'- ----gGGCGCGucCUCG-GCgACCGaCCCCu -3'
miRNA:   3'- cauuaUCGCGU--GAGCaUG-UGGC-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.