miRNA display CGI


Results 61 - 80 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 82375 0.68 0.904595
Target:  5'- ----gGGCGCGCgCGgaaccacgGCGCCGUCCa -3'
miRNA:   3'- cauuaUCGCGUGaGCa-------UGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 82198 0.66 0.9636
Target:  5'- ----gGGCGCcggcggccGCUCGUGuCGCCGCUg- -3'
miRNA:   3'- cauuaUCGCG--------UGAGCAU-GUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 81346 0.67 0.9479
Target:  5'- ----cGGCGCGCUgGUgccgcGCGCaCGCgCCg -3'
miRNA:   3'- cauuaUCGCGUGAgCA-----UGUG-GCGgGG- -5'
6815 5' -53 NC_001875.2 + 80131 0.66 0.956227
Target:  5'- -gGGUcGuCGCACUCGUGCGCguCGCUgCu -3'
miRNA:   3'- caUUAuC-GCGUGAGCAUGUG--GCGGgG- -5'
6815 5' -53 NC_001875.2 + 79874 0.66 0.960031
Target:  5'- cGUGGUccacGCGCGCgCGUGCGgcacgUCGCgCCCa -3'
miRNA:   3'- -CAUUAu---CGCGUGaGCAUGU-----GGCG-GGG- -5'
6815 5' -53 NC_001875.2 + 78314 0.7 0.84565
Target:  5'- cUGGUAGCGCACgaCGUGCGCCaaaaacacgcGCaCCg -3'
miRNA:   3'- cAUUAUCGCGUGa-GCAUGUGG----------CGgGG- -5'
6815 5' -53 NC_001875.2 + 77494 0.71 0.762062
Target:  5'- gGUAccAGCGCGCgcauuccuucaaCGUGCACUuuuGCCCCa -3'
miRNA:   3'- -CAUuaUCGCGUGa-----------GCAUGUGG---CGGGG- -5'
6815 5' -53 NC_001875.2 + 73981 0.7 0.811054
Target:  5'- ----aAGCGUGCUC--AUACCGCUCCa -3'
miRNA:   3'- cauuaUCGCGUGAGcaUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 72947 0.7 0.84565
Target:  5'- --cGUAGCGCGCguucgCGgccugcaaACGCUGCUCCg -3'
miRNA:   3'- cauUAUCGCGUGa----GCa-------UGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 71602 0.76 0.526368
Target:  5'- ---cUAGCGCGCUCGUGC-UCGCCa- -3'
miRNA:   3'- cauuAUCGCGUGAGCAUGuGGCGGgg -5'
6815 5' -53 NC_001875.2 + 70726 0.66 0.970058
Target:  5'- ---uUGGC-CACgCGUcaACGCCaGCCCCu -3'
miRNA:   3'- cauuAUCGcGUGaGCA--UGUGG-CGGGG- -5'
6815 5' -53 NC_001875.2 + 69484 0.69 0.887075
Target:  5'- ---cUGGCGCGCgacccaaacugGCGCCGCgCCCa -3'
miRNA:   3'- cauuAUCGCGUGagca-------UGUGGCG-GGG- -5'
6815 5' -53 NC_001875.2 + 68852 0.71 0.801953
Target:  5'- ----gGGuCGCACgCGUGCGCgagUGCCCCg -3'
miRNA:   3'- cauuaUC-GCGUGaGCAUGUG---GCGGGG- -5'
6815 5' -53 NC_001875.2 + 68571 0.68 0.91089
Target:  5'- -cGGUcGCGCACcgCGUgGCGCCGCUggCCg -3'
miRNA:   3'- caUUAuCGCGUGa-GCA-UGUGGCGG--GG- -5'
6815 5' -53 NC_001875.2 + 68309 0.7 0.853805
Target:  5'- ----aGGUGUACUCGUugGCuCGCCa- -3'
miRNA:   3'- cauuaUCGCGUGAGCAugUG-GCGGgg -5'
6815 5' -53 NC_001875.2 + 68151 0.76 0.486466
Target:  5'- -----cGCGCAcCUCGUGCG-CGCCCCu -3'
miRNA:   3'- cauuauCGCGU-GAGCAUGUgGCGGGG- -5'
6815 5' -53 NC_001875.2 + 67887 0.66 0.9636
Target:  5'- ----cAGCGCGgUCGgcgACAgCGCCUUc -3'
miRNA:   3'- cauuaUCGCGUgAGCa--UGUgGCGGGG- -5'
6815 5' -53 NC_001875.2 + 67799 0.66 0.958914
Target:  5'- aGUAAUAGCucGCugUCGUauuuaaucuuguucACGCuCGUCCa -3'
miRNA:   3'- -CAUUAUCG--CGugAGCA--------------UGUG-GCGGGg -5'
6815 5' -53 NC_001875.2 + 67082 0.67 0.938586
Target:  5'- cGUAAUcGGUGCACUUGUuguaccagaucGCuuCGCCCa -3'
miRNA:   3'- -CAUUA-UCGCGUGAGCA-----------UGugGCGGGg -5'
6815 5' -53 NC_001875.2 + 66919 0.66 0.956227
Target:  5'- -aAAUGGCGCACaaugUCGU-CGUCGCUCUg -3'
miRNA:   3'- caUUAUCGCGUG----AGCAuGUGGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.