miRNA display CGI


Results 101 - 120 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 52827 0.67 0.933552
Target:  5'- ---cUAGCGCgcgACUCGgacACGCUGUCCa -3'
miRNA:   3'- cauuAUCGCG---UGAGCa--UGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 51972 0.66 0.966616
Target:  5'- -----cGCGCGCgCGUggaccacGCGCCaCCCCa -3'
miRNA:   3'- cauuauCGCGUGaGCA-------UGUGGcGGGG- -5'
6815 5' -53 NC_001875.2 + 51840 0.7 0.832177
Target:  5'- ----cGGUGCaauACUCGUacucgacguuccucaACACCGCCUCg -3'
miRNA:   3'- cauuaUCGCG---UGAGCA---------------UGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 51198 0.69 0.876968
Target:  5'- ----cGGCGCGgUUcugGCGCCGCCCg -3'
miRNA:   3'- cauuaUCGCGUgAGca-UGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 49785 0.7 0.811054
Target:  5'- ----cGGUGCugUacUGcGCGCCGCCCCc -3'
miRNA:   3'- cauuaUCGCGugA--GCaUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 49111 0.66 0.960031
Target:  5'- -----cGUGCGCguaaaGCGCUGCCCCg -3'
miRNA:   3'- cauuauCGCGUGagca-UGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 48829 0.69 0.876968
Target:  5'- -----cGCGCGCUacgGCGCCGCUUCa -3'
miRNA:   3'- cauuauCGCGUGAgcaUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 48818 0.76 0.516269
Target:  5'- --cGUGGCGCACUCGcUGCGCgCGgUCCa -3'
miRNA:   3'- cauUAUCGCGUGAGC-AUGUG-GCgGGG- -5'
6815 5' -53 NC_001875.2 + 48516 0.75 0.577841
Target:  5'- ---uUGGCGCGC-CGcccgGCGCgCGCCCCg -3'
miRNA:   3'- cauuAUCGCGUGaGCa---UGUG-GCGGGG- -5'
6815 5' -53 NC_001875.2 + 48190 0.67 0.928266
Target:  5'- uGUGGUAuuGCGCACUUuggGCAaauGCCCCg -3'
miRNA:   3'- -CAUUAU--CGCGUGAGca-UGUgg-CGGGG- -5'
6815 5' -53 NC_001875.2 + 48019 0.7 0.811054
Target:  5'- cGUGGUGGCGgccCACgUGgcCGCCGCCCa -3'
miRNA:   3'- -CAUUAUCGC---GUGaGCauGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 47442 0.67 0.9479
Target:  5'- -----cGCGCcgccgccgaaGCUcCGgcuaccgACGCCGCCCCg -3'
miRNA:   3'- cauuauCGCG----------UGA-GCa------UGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 46580 0.67 0.943367
Target:  5'- ----cGGgGCGCUCGUguccGCGCCGagcgcggaaCCCg -3'
miRNA:   3'- cauuaUCgCGUGAGCA----UGUGGCg--------GGG- -5'
6815 5' -53 NC_001875.2 + 44469 0.67 0.928266
Target:  5'- ----cAGUGCGCcaagUCGUGCACCGgCgCg -3'
miRNA:   3'- cauuaUCGCGUG----AGCAUGUGGCgGgG- -5'
6815 5' -53 NC_001875.2 + 43714 0.67 0.938586
Target:  5'- ---uUGGCGcCGCUCa-GCACCGUgCCCg -3'
miRNA:   3'- cauuAUCGC-GUGAGcaUGUGGCG-GGG- -5'
6815 5' -53 NC_001875.2 + 42702 0.69 0.861748
Target:  5'- ----cGGCGCGCgguuUCGUACGCaaggCGCaCCCg -3'
miRNA:   3'- cauuaUCGCGUG----AGCAUGUG----GCG-GGG- -5'
6815 5' -53 NC_001875.2 + 42583 0.67 0.937102
Target:  5'- ----cGGCGCACgcgcgCGUcagcucggcgcuggGCACCGCCa- -3'
miRNA:   3'- cauuaUCGCGUGa----GCA--------------UGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 42493 0.67 0.928266
Target:  5'- -----cGCGCACgccgucguccgCGUGCGCCGCaaagcugaggCCCg -3'
miRNA:   3'- cauuauCGCGUGa----------GCAUGUGGCG----------GGG- -5'
6815 5' -53 NC_001875.2 + 41916 0.66 0.956227
Target:  5'- -aAGUGGCcCGCggacGCGCCGCCCUu -3'
miRNA:   3'- caUUAUCGcGUGagcaUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 40695 0.68 0.916934
Target:  5'- ----cGGCGCAUUUGga-ACCGCCgCg -3'
miRNA:   3'- cauuaUCGCGUGAGCaugUGGCGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.