miRNA display CGI


Results 61 - 80 of 173 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 48019 0.7 0.811054
Target:  5'- cGUGGUGGCGgccCACgUGgcCGCCGCCCa -3'
miRNA:   3'- -CAUUAUCGC---GUGaGCauGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 18163 0.7 0.811054
Target:  5'- ----cGGCGCGCgCG-ACGCCGCCaCUg -3'
miRNA:   3'- cauuaUCGCGUGaGCaUGUGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 23093 0.69 0.869471
Target:  5'- -----cGCGC-CgCGUGCAgCUGCCCCg -3'
miRNA:   3'- cauuauCGCGuGaGCAUGU-GGCGGGG- -5'
6815 5' -53 NC_001875.2 + 12175 0.69 0.876968
Target:  5'- ----aAGC-CGCU-GUGCGCCGCCgCCg -3'
miRNA:   3'- cauuaUCGcGUGAgCAUGUGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 48829 0.69 0.876968
Target:  5'- -----cGCGCGCUacgGCGCCGCUUCa -3'
miRNA:   3'- cauuauCGCGUGAgcaUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 37432 0.69 0.884234
Target:  5'- --cGUGGCGCAgUCGgcgGCcaaauaGCCGCCgCa -3'
miRNA:   3'- cauUAUCGCGUgAGCa--UG------UGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 95729 0.68 0.898052
Target:  5'- ----aAGUGCAUgagCG-GCGCCGCCgCCg -3'
miRNA:   3'- cauuaUCGCGUGa--GCaUGUGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 117617 0.68 0.91089
Target:  5'- cGUA--GGCGC-UUUGcGCACgGCCCCa -3'
miRNA:   3'- -CAUuaUCGCGuGAGCaUGUGgCGGGG- -5'
6815 5' -53 NC_001875.2 + 117665 0.68 0.91089
Target:  5'- cGUA--GGCGC-UUUGcGCACgGCCCCa -3'
miRNA:   3'- -CAUuaUCGCGuGAGCaUGUGgCGGGG- -5'
6815 5' -53 NC_001875.2 + 68571 0.68 0.91089
Target:  5'- -cGGUcGCGCACcgCGUgGCGCCGCUggCCg -3'
miRNA:   3'- caUUAuCGCGUGa-GCA-UGUGGCGG--GG- -5'
6815 5' -53 NC_001875.2 + 42702 0.69 0.861748
Target:  5'- ----cGGCGCGCgguuUCGUACGCaaggCGCaCCCg -3'
miRNA:   3'- cauuaUCGCGUG----AGCAUGUG----GCG-GGG- -5'
6815 5' -53 NC_001875.2 + 22726 0.7 0.853805
Target:  5'- --uGUGGCcUACUUGUGCGCCGgCCa -3'
miRNA:   3'- cauUAUCGcGUGAGCAUGUGGCgGGg -5'
6815 5' -53 NC_001875.2 + 49785 0.7 0.811054
Target:  5'- ----cGGUGCugUacUGcGCGCCGCCCCc -3'
miRNA:   3'- cauuaUCGCGugA--GCaUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 56252 0.7 0.828731
Target:  5'- ----cGGCGCGCggcugcaGUACuuuGCCGCCCUc -3'
miRNA:   3'- cauuaUCGCGUGag-----CAUG---UGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 51840 0.7 0.832177
Target:  5'- ----cGGUGCaauACUCGUacucgacguuccucaACACCGCCUCg -3'
miRNA:   3'- cauuaUCGCG---UGAGCA---------------UGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 58044 0.7 0.837289
Target:  5'- ----cGGCGCGCUgcCGUuccaGCCGCCgCCg -3'
miRNA:   3'- cauuaUCGCGUGA--GCAug--UGGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 62604 0.7 0.837289
Target:  5'- ----cAGCGCGC-CGUucgACGCCGCCg- -3'
miRNA:   3'- cauuaUCGCGUGaGCA---UGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 119056 0.7 0.837289
Target:  5'- ----cGGCGUGCgcaUGUGCGCggCGCCCCg -3'
miRNA:   3'- cauuaUCGCGUGa--GCAUGUG--GCGGGG- -5'
6815 5' -53 NC_001875.2 + 14942 0.7 0.84565
Target:  5'- -gGAUGGCGUugGCgUCGUGCACCucauaCCCUg -3'
miRNA:   3'- caUUAUCGCG--UG-AGCAUGUGGc----GGGG- -5'
6815 5' -53 NC_001875.2 + 78314 0.7 0.84565
Target:  5'- cUGGUAGCGCACgaCGUGCGCCaaaaacacgcGCaCCg -3'
miRNA:   3'- cAUUAUCGCGUGa-GCAUGUGG----------CGgGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.