Results 121 - 140 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6815 | 5' | -53 | NC_001875.2 | + | 92786 | 0.75 | 0.567437 |
Target: 5'- -cAAUGGCcauGCGCUUgcgGUACAgCGCCCCg -3' miRNA: 3'- caUUAUCG---CGUGAG---CAUGUgGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 71602 | 0.76 | 0.526368 |
Target: 5'- ---cUAGCGCGCUCGUGC-UCGCCa- -3' miRNA: 3'- cauuAUCGCGUGAGCAUGuGGCGGgg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 48818 | 0.76 | 0.516269 |
Target: 5'- --cGUGGCGCACUCGcUGCGCgCGgUCCa -3' miRNA: 3'- cauUAUCGCGUGAGC-AUGUG-GCgGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 124375 | 0.76 | 0.505251 |
Target: 5'- -cAAUGGCGCagaaucgGC-CGUACACCGCCgCa -3' miRNA: 3'- caUUAUCGCG-------UGaGCAUGUGGCGGgG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 18274 | 0.77 | 0.438717 |
Target: 5'- -cAAUGGCGCGC-CGUGCgcgACCGCgCCg -3' miRNA: 3'- caUUAUCGCGUGaGCAUG---UGGCGgGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 10410 | 0.78 | 0.402512 |
Target: 5'- gGUAAaGGCGCGC-CGUGCAucCCGaCCCCa -3' miRNA: 3'- -CAUUaUCGCGUGaGCAUGU--GGC-GGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 13475 | 0.73 | 0.682835 |
Target: 5'- ----aGGuCGCACUCGUACagcggGCCGCCgCu -3' miRNA: 3'- cauuaUC-GCGUGAGCAUG-----UGGCGGgG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 18532 | 0.73 | 0.703594 |
Target: 5'- -gAGUA-CGCGCUCGUguuugGCAUCGCCaCCg -3' miRNA: 3'- caUUAUcGCGUGAGCA-----UGUGGCGG-GG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 92555 | 0.72 | 0.713882 |
Target: 5'- -----cGCGCACUUGgugucgGCgggcagaaGCCGCCCCg -3' miRNA: 3'- cauuauCGCGUGAGCa-----UG--------UGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 36541 | 0.7 | 0.837289 |
Target: 5'- ----cGGCGCuggCGcGCACCGUCCCc -3' miRNA: 3'- cauuaUCGCGugaGCaUGUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 18369 | 0.7 | 0.819983 |
Target: 5'- ----cGGCGUGCuaaugcaauugUCGUACACCGCCg- -3' miRNA: 3'- cauuaUCGCGUG-----------AGCAUGUGGCGGgg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 73981 | 0.7 | 0.811054 |
Target: 5'- ----aAGCGUGCUC--AUACCGCUCCa -3' miRNA: 3'- cauuaUCGCGUGAGcaUGUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 9711 | 0.7 | 0.811054 |
Target: 5'- -----uGCGCGC-CGgccGCGCCGCgCCCg -3' miRNA: 3'- cauuauCGCGUGaGCa--UGUGGCG-GGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 89533 | 0.71 | 0.801953 |
Target: 5'- ----gGGCGCGCUCGaucuguacuugGCGCCGCgggugCCCa -3' miRNA: 3'- cauuaUCGCGUGAGCa----------UGUGGCG-----GGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 92650 | 0.71 | 0.791754 |
Target: 5'- uGUAGcGGCGCAC-CGUAaacgccacgcaacCGCCGgCCCg -3' miRNA: 3'- -CAUUaUCGCGUGaGCAU-------------GUGGCgGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 311 | 0.71 | 0.783272 |
Target: 5'- ----gGGCGCGCUU-UGCGCCGCUUCc -3' miRNA: 3'- cauuaUCGCGUGAGcAUGUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 21670 | 0.71 | 0.773711 |
Target: 5'- ----gAGCGCAgUgCG-ACGCCGCCCg -3' miRNA: 3'- cauuaUCGCGUgA-GCaUGUGGCGGGg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 5013 | 0.71 | 0.764017 |
Target: 5'- -----uGUGCACUU-UGCGCCGCCUCg -3' miRNA: 3'- cauuauCGCGUGAGcAUGUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 77494 | 0.71 | 0.762062 |
Target: 5'- gGUAccAGCGCGCgcauuccuucaaCGUGCACUuuuGCCCCa -3' miRNA: 3'- -CAUuaUCGCGUGa-----------GCAUGUGG---CGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 18453 | 0.72 | 0.744265 |
Target: 5'- --cGUGGCGCGCgaaUCGcGCGCCGCUgaCCg -3' miRNA: 3'- cauUAUCGCGUG---AGCaUGUGGCGG--GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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