miRNA display CGI


Results 141 - 160 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 10410 0.78 0.402512
Target:  5'- gGUAAaGGCGCGC-CGUGCAucCCGaCCCCa -3'
miRNA:   3'- -CAUUaUCGCGUGaGCAUGU--GGC-GGGG- -5'
6815 5' -53 NC_001875.2 + 5013 0.71 0.764017
Target:  5'- -----uGUGCACUU-UGCGCCGCCUCg -3'
miRNA:   3'- cauuauCGCGUGAGcAUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 21670 0.71 0.773711
Target:  5'- ----gAGCGCAgUgCG-ACGCCGCCCg -3'
miRNA:   3'- cauuaUCGCGUgA-GCaUGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 311 0.71 0.783272
Target:  5'- ----gGGCGCGCUU-UGCGCCGCUUCc -3'
miRNA:   3'- cauuaUCGCGUGAGcAUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 131003 0.69 0.869471
Target:  5'- -aAAUGGaCGUGCUgcacCACCGCCCCa -3'
miRNA:   3'- caUUAUC-GCGUGAgcauGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 93998 0.69 0.869471
Target:  5'- uGUGGUGcGCGCGCagcgugUCGUACGugaUCGCCaCCg -3'
miRNA:   3'- -CAUUAU-CGCGUG------AGCAUGU---GGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 36494 0.69 0.861748
Target:  5'- -----cGCGUGCaCGUGCGCCGCCg- -3'
miRNA:   3'- cauuauCGCGUGaGCAUGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 99836 0.7 0.853805
Target:  5'- ----cAGUGCGCUgCGU-CGCCGCCgCu -3'
miRNA:   3'- cauuaUCGCGUGA-GCAuGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 86289 0.7 0.853805
Target:  5'- ----gAGCGCAaaucguacaCGUGCugCGCCCUu -3'
miRNA:   3'- cauuaUCGCGUga-------GCAUGugGCGGGG- -5'
6815 5' -53 NC_001875.2 + 68309 0.7 0.853805
Target:  5'- ----aGGUGUACUCGUugGCuCGCCa- -3'
miRNA:   3'- cauuaUCGCGUGAGCAugUG-GCGGgg -5'
6815 5' -53 NC_001875.2 + 53521 0.7 0.853805
Target:  5'- cGUGuuuuUGGCGCACgUCGUGCGCUaccagcgcgaGCCgCa -3'
miRNA:   3'- -CAUu---AUCGCGUG-AGCAUGUGG----------CGGgG- -5'
6815 5' -53 NC_001875.2 + 94615 0.7 0.852999
Target:  5'- --uGUAGCGCggcagcgGCUUGcUGCACCGCUgCg -3'
miRNA:   3'- cauUAUCGCG-------UGAGC-AUGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 72947 0.7 0.84565
Target:  5'- --cGUAGCGCGCguucgCGgccugcaaACGCUGCUCCg -3'
miRNA:   3'- cauUAUCGCGUGa----GCa-------UGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 113285 0.7 0.837289
Target:  5'- ----aAGCGCGCUCaagACACCcacGCCCa -3'
miRNA:   3'- cauuaUCGCGUGAGca-UGUGG---CGGGg -5'
6815 5' -53 NC_001875.2 + 36541 0.7 0.837289
Target:  5'- ----cGGCGCuggCGcGCACCGUCCCc -3'
miRNA:   3'- cauuaUCGCGugaGCaUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 18369 0.7 0.819983
Target:  5'- ----cGGCGUGCuaaugcaauugUCGUACACCGCCg- -3'
miRNA:   3'- cauuaUCGCGUG-----------AGCAUGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 73981 0.7 0.811054
Target:  5'- ----aAGCGUGCUC--AUACCGCUCCa -3'
miRNA:   3'- cauuaUCGCGUGAGcaUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 9711 0.7 0.811054
Target:  5'- -----uGCGCGC-CGgccGCGCCGCgCCCg -3'
miRNA:   3'- cauuauCGCGUGaGCa--UGUGGCG-GGG- -5'
6815 5' -53 NC_001875.2 + 89533 0.71 0.801953
Target:  5'- ----gGGCGCGCUCGaucuguacuugGCGCCGCgggugCCCa -3'
miRNA:   3'- cauuaUCGCGUGAGCa----------UGUGGCG-----GGG- -5'
6815 5' -53 NC_001875.2 + 92650 0.71 0.791754
Target:  5'- uGUAGcGGCGCAC-CGUAaacgccacgcaacCGCCGgCCCg -3'
miRNA:   3'- -CAUUaUCGCGUGaGCAU-------------GUGGCgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.