miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 9711 0.7 0.811054
Target:  5'- -----uGCGCGC-CGgccGCGCCGCgCCCg -3'
miRNA:   3'- cauuauCGCGUGaGCa--UGUGGCG-GGG- -5'
6815 5' -53 NC_001875.2 + 311 0.71 0.783272
Target:  5'- ----gGGCGCGCUU-UGCGCCGCUUCc -3'
miRNA:   3'- cauuaUCGCGUGAGcAUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 84133 0.73 0.661898
Target:  5'- ----cAGCagGCAgUCGUGCACuUGCCCCg -3'
miRNA:   3'- cauuaUCG--CGUgAGCAUGUG-GCGGGG- -5'
6815 5' -53 NC_001875.2 + 124375 0.76 0.505251
Target:  5'- -cAAUGGCGCagaaucgGC-CGUACACCGCCgCa -3'
miRNA:   3'- caUUAUCGCG-------UGaGCAUGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 93998 0.69 0.869471
Target:  5'- uGUGGUGcGCGCGCagcgugUCGUACGugaUCGCCaCCg -3'
miRNA:   3'- -CAUUAU-CGCGUG------AGCAUGU---GGCGG-GG- -5'
6815 5' -53 NC_001875.2 + 72947 0.7 0.84565
Target:  5'- --cGUAGCGCGCguucgCGgccugcaaACGCUGCUCCg -3'
miRNA:   3'- cauUAUCGCGUGa----GCa-------UGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 5013 0.71 0.764017
Target:  5'- -----uGUGCACUU-UGCGCCGCCUCg -3'
miRNA:   3'- cauuauCGCGUGAGcAUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 18274 0.77 0.438717
Target:  5'- -cAAUGGCGCGC-CGUGCgcgACCGCgCCg -3'
miRNA:   3'- caUUAUCGCGUGaGCAUG---UGGCGgGG- -5'
6815 5' -53 NC_001875.2 + 113285 0.7 0.837289
Target:  5'- ----aAGCGCGCUCaagACACCcacGCCCa -3'
miRNA:   3'- cauuaUCGCGUGAGca-UGUGG---CGGGg -5'
6815 5' -53 NC_001875.2 + 10410 0.78 0.402512
Target:  5'- gGUAAaGGCGCGC-CGUGCAucCCGaCCCCa -3'
miRNA:   3'- -CAUUaUCGCGUGaGCAUGU--GGC-GGGG- -5'
6815 5' -53 NC_001875.2 + 21670 0.71 0.773711
Target:  5'- ----gAGCGCAgUgCG-ACGCCGCCCg -3'
miRNA:   3'- cauuaUCGCGUgA-GCaUGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 73981 0.7 0.811054
Target:  5'- ----aAGCGUGCUC--AUACCGCUCCa -3'
miRNA:   3'- cauuaUCGCGUGAGcaUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 92555 0.72 0.713882
Target:  5'- -----cGCGCACUUGgugucgGCgggcagaaGCCGCCCCg -3'
miRNA:   3'- cauuauCGCGUGAGCa-----UG--------UGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 120684 0.73 0.661898
Target:  5'- -cGAUGcGCGCGCg-GUACGCCuCCCCg -3'
miRNA:   3'- caUUAU-CGCGUGagCAUGUGGcGGGG- -5'
6815 5' -53 NC_001875.2 + 63896 0.75 0.577841
Target:  5'- aGUAAgaAGCGCGC-CGUgGCGCCGCCgCa -3'
miRNA:   3'- -CAUUa-UCGCGUGaGCA-UGUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 48818 0.76 0.516269
Target:  5'- --cGUGGCGCACUCGcUGCGCgCGgUCCa -3'
miRNA:   3'- cauUAUCGCGUGAGC-AUGUG-GCgGGG- -5'
6815 5' -53 NC_001875.2 + 20043 0.69 0.884234
Target:  5'- ----aGGCGCcgucgGCcgCGUGCACCGCCg- -3'
miRNA:   3'- cauuaUCGCG-----UGa-GCAUGUGGCGGgg -5'
6815 5' -53 NC_001875.2 + 131003 0.69 0.869471
Target:  5'- -aAAUGGaCGUGCUgcacCACCGCCCCa -3'
miRNA:   3'- caUUAUC-GCGUGAgcauGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 86289 0.7 0.853805
Target:  5'- ----gAGCGCAaaucguacaCGUGCugCGCCCUu -3'
miRNA:   3'- cauuaUCGCGUga-------GCAUGugGCGGGG- -5'
6815 5' -53 NC_001875.2 + 94615 0.7 0.852999
Target:  5'- --uGUAGCGCggcagcgGCUUGcUGCACCGCUgCg -3'
miRNA:   3'- cauUAUCGCG-------UGAGC-AUGUGGCGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.