miRNA display CGI


Results 81 - 100 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6815 5' -53 NC_001875.2 + 68309 0.7 0.853805
Target:  5'- ----aGGUGUACUCGUugGCuCGCCa- -3'
miRNA:   3'- cauuaUCGCGUGAGCAugUG-GCGGgg -5'
6815 5' -53 NC_001875.2 + 56815 0.66 0.956227
Target:  5'- -----cGCGUACUCGUuCACgGCCg- -3'
miRNA:   3'- cauuauCGCGUGAGCAuGUGgCGGgg -5'
6815 5' -53 NC_001875.2 + 5512 0.66 0.956227
Target:  5'- ----cGGCGCACgcgCGcaguuUACGCCgGCCgCCg -3'
miRNA:   3'- cauuaUCGCGUGa--GC-----AUGUGG-CGG-GG- -5'
6815 5' -53 NC_001875.2 + 26222 0.66 0.952185
Target:  5'- -----uGCGCACcacaCGUGCaACCGCUCUu -3'
miRNA:   3'- cauuauCGCGUGa---GCAUG-UGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 92650 0.71 0.791754
Target:  5'- uGUAGcGGCGCAC-CGUAaacgccacgcaacCGCCGgCCCg -3'
miRNA:   3'- -CAUUaUCGCGUGaGCAU-------------GUGGCgGGG- -5'
6815 5' -53 NC_001875.2 + 73981 0.7 0.811054
Target:  5'- ----aAGCGUGCUC--AUACCGCUCCa -3'
miRNA:   3'- cauuaUCGCGUGAGcaUGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 72947 0.7 0.84565
Target:  5'- --cGUAGCGCGCguucgCGgccugcaaACGCUGCUCCg -3'
miRNA:   3'- cauUAUCGCGUGa----GCa-------UGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 67082 0.67 0.938586
Target:  5'- cGUAAUcGGUGCACUUGUuguaccagaucGCuuCGCCCa -3'
miRNA:   3'- -CAUUA-UCGCGUGAGCA-----------UGugGCGGGg -5'
6815 5' -53 NC_001875.2 + 15173 0.67 0.943367
Target:  5'- ----cAGCaGCAuCUUGUACAUgGCCCa -3'
miRNA:   3'- cauuaUCG-CGU-GAGCAUGUGgCGGGg -5'
6815 5' -53 NC_001875.2 + 110347 0.67 0.943367
Target:  5'- ----gGGCuGCACUCG-GCGUCGCCCg -3'
miRNA:   3'- cauuaUCG-CGUGAGCaUGUGGCGGGg -5'
6815 5' -53 NC_001875.2 + 93202 0.67 0.943367
Target:  5'- ----cAGCGCGCaauacgcggCGU-CACUGUCCCa -3'
miRNA:   3'- cauuaUCGCGUGa--------GCAuGUGGCGGGG- -5'
6815 5' -53 NC_001875.2 + 14942 0.7 0.84565
Target:  5'- -gGAUGGCGUugGCgUCGUGCACCucauaCCCUg -3'
miRNA:   3'- caUUAUCGCG--UG-AGCAUGUGGc----GGGG- -5'
6815 5' -53 NC_001875.2 + 22726 0.7 0.853805
Target:  5'- --uGUGGCcUACUUGUGCGCCGgCCa -3'
miRNA:   3'- cauUAUCGcGUGAGCAUGUGGCgGGg -5'
6815 5' -53 NC_001875.2 + 42702 0.69 0.861748
Target:  5'- ----cGGCGCGCgguuUCGUACGCaaggCGCaCCCg -3'
miRNA:   3'- cauuaUCGCGUG----AGCAUGUG----GCG-GGG- -5'
6815 5' -53 NC_001875.2 + 31682 0.67 0.9479
Target:  5'- ----cAGCGUGCcggCGUGgACCGCCgCu -3'
miRNA:   3'- cauuaUCGCGUGa--GCAUgUGGCGGgG- -5'
6815 5' -53 NC_001875.2 + 81346 0.67 0.9479
Target:  5'- ----cGGCGCGCUgGUgccgcGCGCaCGCgCCg -3'
miRNA:   3'- cauuaUCGCGUGAgCA-----UGUG-GCGgGG- -5'
6815 5' -53 NC_001875.2 + 65760 0.67 0.9479
Target:  5'- ----cGGCGUAUUCGUGCGCgGCg-- -3'
miRNA:   3'- cauuaUCGCGUGAGCAUGUGgCGggg -5'
6815 5' -53 NC_001875.2 + 92500 0.73 0.682835
Target:  5'- cGUGAUgGGCGCaaaacgggcGCUCGUGCG-CGCCCg -3'
miRNA:   3'- -CAUUA-UCGCG---------UGAGCAUGUgGCGGGg -5'
6815 5' -53 NC_001875.2 + 54305 0.73 0.682835
Target:  5'- -aAGUAGCuGgGCUCGUGCACgGCCg- -3'
miRNA:   3'- caUUAUCG-CgUGAGCAUGUGgCGGgg -5'
6815 5' -53 NC_001875.2 + 11184 0.67 0.943367
Target:  5'- -aAGUuGCGCGC-CGUuguggagcacgACGCCGCgCCg -3'
miRNA:   3'- caUUAuCGCGUGaGCA-----------UGUGGCGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.