Results 121 - 140 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6815 | 5' | -53 | NC_001875.2 | + | 93202 | 0.67 | 0.943367 |
Target: 5'- ----cAGCGCGCaauacgcggCGU-CACUGUCCCa -3' miRNA: 3'- cauuaUCGCGUGa--------GCAuGUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 11184 | 0.67 | 0.943367 |
Target: 5'- -aAGUuGCGCGC-CGUuguggagcacgACGCCGCgCCg -3' miRNA: 3'- caUUAuCGCGUGaGCA-----------UGUGGCGgGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 65760 | 0.67 | 0.9479 |
Target: 5'- ----cGGCGUAUUCGUGCGCgGCg-- -3' miRNA: 3'- cauuaUCGCGUGAGCAUGUGgCGggg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 81346 | 0.67 | 0.9479 |
Target: 5'- ----cGGCGCGCUgGUgccgcGCGCaCGCgCCg -3' miRNA: 3'- cauuaUCGCGUGAgCA-----UGUG-GCGgGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 55093 | 0.66 | 0.970058 |
Target: 5'- ----cAGCGCGucCUUGUGC-UCGUCCCc -3' miRNA: 3'- cauuaUCGCGU--GAGCAUGuGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 82963 | 0.66 | 0.970058 |
Target: 5'- ----gGGCGCGucCUCG-GCgACCGaCCCCu -3' miRNA: 3'- cauuaUCGCGU--GAGCaUG-UGGC-GGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 1720 | 0.67 | 0.938586 |
Target: 5'- cUGcgGGCGCGacacCGgucGCGCCGCCgCCg -3' miRNA: 3'- cAUuaUCGCGUga--GCa--UGUGGCGG-GG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 28841 | 0.68 | 0.916934 |
Target: 5'- ----cAGCGCACUUGc-CGCaCGCCaCCa -3' miRNA: 3'- cauuaUCGCGUGAGCauGUG-GCGG-GG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 93063 | 0.68 | 0.916934 |
Target: 5'- uUGcgGGCGCGCUCu----CCGCCCa -3' miRNA: 3'- cAUuaUCGCGUGAGcauguGGCGGGg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 40695 | 0.68 | 0.916934 |
Target: 5'- ----cGGCGCAUUUGga-ACCGCCgCg -3' miRNA: 3'- cauuaUCGCGUGAGCaugUGGCGGgG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 86744 | 0.68 | 0.916934 |
Target: 5'- aUGAaGGCGCGCacgUCGgGCACCGCUa- -3' miRNA: 3'- cAUUaUCGCGUG---AGCaUGUGGCGGgg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 84859 | 0.68 | 0.922727 |
Target: 5'- --cGUGGUGCGCUCaucgcggcuCACCGUCUCg -3' miRNA: 3'- cauUAUCGCGUGAGcau------GUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 11078 | 0.68 | 0.922727 |
Target: 5'- uGgcGUGGCGCGCgcccuggacaCGgcCGCCGUCUCg -3' miRNA: 3'- -CauUAUCGCGUGa---------GCauGUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 17704 | 0.67 | 0.928266 |
Target: 5'- cGUAcaAGCuGCAUUUGUACGCCaGCCa- -3' miRNA: 3'- -CAUuaUCG-CGUGAGCAUGUGG-CGGgg -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 48190 | 0.67 | 0.928266 |
Target: 5'- uGUGGUAuuGCGCACUUuggGCAaauGCCCCg -3' miRNA: 3'- -CAUUAU--CGCGUGAGca-UGUgg-CGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 85252 | 0.67 | 0.928266 |
Target: 5'- -gGGUucCGCGCUCGgcgcggACACgagCGCCCCg -3' miRNA: 3'- caUUAucGCGUGAGCa-----UGUG---GCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 44469 | 0.67 | 0.928266 |
Target: 5'- ----cAGUGCGCcaagUCGUGCACCGgCgCg -3' miRNA: 3'- cauuaUCGCGUG----AGCAUGUGGCgGgG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 131073 | 0.67 | 0.933552 |
Target: 5'- -----cGCGCGCcgcCGUcaGCUGCCCCa -3' miRNA: 3'- cauuauCGCGUGa--GCAugUGGCGGGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 19347 | 0.67 | 0.935596 |
Target: 5'- gGgcGUGGUGCGCggagCGUugGCCGacguaaaguuuaaaCCCa -3' miRNA: 3'- -CauUAUCGCGUGa---GCAugUGGCg-------------GGG- -5' |
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6815 | 5' | -53 | NC_001875.2 | + | 42583 | 0.67 | 0.937102 |
Target: 5'- ----cGGCGCACgcgcgCGUcagcucggcgcuggGCACCGCCa- -3' miRNA: 3'- cauuaUCGCGUGa----GCA--------------UGUGGCGGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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