miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6816 3' -58 NC_001875.2 + 86378 0.66 0.796473
Target:  5'- aGACGCgCGgcuGCgGGCGCCGagCGCCGAg -3'
miRNA:   3'- -CUGCG-GUag-CGgCUGCGGUa-GUGGUU- -5'
6816 3' -58 NC_001875.2 + 42077 0.66 0.796473
Target:  5'- aGCG-CGUCGCCGACcaCCAUUuuGCCGAa -3'
miRNA:   3'- cUGCgGUAGCGGCUGc-GGUAG--UGGUU- -5'
6816 3' -58 NC_001875.2 + 124120 0.66 0.796473
Target:  5'- cGGCGUCAaUGuCCGACGCguUCACgCAGc -3'
miRNA:   3'- -CUGCGGUaGC-GGCUGCGguAGUG-GUU- -5'
6816 3' -58 NC_001875.2 + 73455 0.66 0.796473
Target:  5'- uGCGCUGUUGaCGACGCgCGUUugCAAa -3'
miRNA:   3'- cUGCGGUAGCgGCUGCG-GUAGugGUU- -5'
6816 3' -58 NC_001875.2 + 130350 0.66 0.796473
Target:  5'- --gGUCGUCGCUGACGCac-CGCUAAa -3'
miRNA:   3'- cugCGGUAGCGGCUGCGguaGUGGUU- -5'
6816 3' -58 NC_001875.2 + 130284 0.66 0.796473
Target:  5'- --gGUCGUCGCUGACGCac-CGCUAAa -3'
miRNA:   3'- cugCGGUAGCGGCUGCGguaGUGGUU- -5'
6816 3' -58 NC_001875.2 + 130218 0.66 0.796473
Target:  5'- --gGUCGUCGCUGACGCac-CGCUAAa -3'
miRNA:   3'- cugCGGUAGCGGCUGCGguaGUGGUU- -5'
6816 3' -58 NC_001875.2 + 130152 0.66 0.796473
Target:  5'- --gGUCGUCGCUGACGCac-CGCUAAa -3'
miRNA:   3'- cugCGGUAGCGGCUGCGguaGUGGUU- -5'
6816 3' -58 NC_001875.2 + 23360 0.66 0.787324
Target:  5'- cACGCCggGUUGCCGAUGUCGUUgAUCAu -3'
miRNA:   3'- cUGCGG--UAGCGGCUGCGGUAG-UGGUu -5'
6816 3' -58 NC_001875.2 + 98212 0.66 0.785477
Target:  5'- cGACGUCGUCGaguuugugcacgCGACGCUGUCuCCAu -3'
miRNA:   3'- -CUGCGGUAGCg-----------GCUGCGGUAGuGGUu -5'
6816 3' -58 NC_001875.2 + 118678 0.66 0.784551
Target:  5'- -uCGCCGuguUCGgCGACGCCuaccgcguggucguGUCGCCGc -3'
miRNA:   3'- cuGCGGU---AGCgGCUGCGG--------------UAGUGGUu -5'
6816 3' -58 NC_001875.2 + 109011 0.66 0.778033
Target:  5'- uACGUCGUgcCGCCGACgguGCCGUCggACCGc -3'
miRNA:   3'- cUGCGGUA--GCGGCUG---CGGUAG--UGGUu -5'
6816 3' -58 NC_001875.2 + 21190 0.66 0.778033
Target:  5'- -uCGUCGUCGCgCGGCacgGCCAgCGCCAc -3'
miRNA:   3'- cuGCGGUAGCG-GCUG---CGGUaGUGGUu -5'
6816 3' -58 NC_001875.2 + 76504 0.66 0.778033
Target:  5'- cGGCGCCcccgaagCGgCG-CGUCAUCACCGu -3'
miRNA:   3'- -CUGCGGua-----GCgGCuGCGGUAGUGGUu -5'
6816 3' -58 NC_001875.2 + 22716 0.66 0.778033
Target:  5'- -uCGCCAagaCCGcCGCCGUCGCCGc -3'
miRNA:   3'- cuGCGGUagcGGCuGCGGUAGUGGUu -5'
6816 3' -58 NC_001875.2 + 45904 0.66 0.778033
Target:  5'- aGGCGCaCAgaaugaCGCCGACuuugcucuGCuCGUCGCCAGa -3'
miRNA:   3'- -CUGCG-GUa-----GCGGCUG--------CG-GUAGUGGUU- -5'
6816 3' -58 NC_001875.2 + 40151 0.66 0.778033
Target:  5'- --aGCCAgUCGCCcaaaaaaacgGGCGCCGcCACCAu -3'
miRNA:   3'- cugCGGU-AGCGG----------CUGCGGUaGUGGUu -5'
6816 3' -58 NC_001875.2 + 92213 0.66 0.778033
Target:  5'- -cCGCCAcCGUCGACuGCCGggGCCGg -3'
miRNA:   3'- cuGCGGUaGCGGCUG-CGGUagUGGUu -5'
6816 3' -58 NC_001875.2 + 10281 0.66 0.778033
Target:  5'- uGACGCCGUggugGUCGAgGCCuUUGCCGAc -3'
miRNA:   3'- -CUGCGGUAg---CGGCUgCGGuAGUGGUU- -5'
6816 3' -58 NC_001875.2 + 33095 0.66 0.76861
Target:  5'- cGGCGCCGUCGCgGcugaGCacgCACCAc -3'
miRNA:   3'- -CUGCGGUAGCGgCug--CGguaGUGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.