miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6816 5' -60.1 NC_001875.2 + 42580 0.66 0.751767
Target:  5'- gGUCGgCGcacGCGCgCGUCaGCuCGGCGCUGg -3'
miRNA:   3'- gUAGCgGC---UGCG-GUAG-CG-GCUGCGGC- -5'
6816 5' -60.1 NC_001875.2 + 39356 0.66 0.751767
Target:  5'- --aCGCUGACGCC--CGCCGucucgUGCCu -3'
miRNA:   3'- guaGCGGCUGCGGuaGCGGCu----GCGGc -5'
6816 5' -60.1 NC_001875.2 + 105208 0.66 0.751767
Target:  5'- uGUCGCCGugGCGCCcUCGUC-AUGCUu -3'
miRNA:   3'- gUAGCGGC--UGCGGuAGCGGcUGCGGc -5'
6816 5' -60.1 NC_001875.2 + 1736 0.66 0.751767
Target:  5'- ---gGUCG-CGCCGcCGCCGcCGCCa -3'
miRNA:   3'- guagCGGCuGCGGUaGCGGCuGCGGc -5'
6816 5' -60.1 NC_001875.2 + 33042 0.66 0.751767
Target:  5'- ---gGCgGGCGCCG-CGCCG-CGCgGa -3'
miRNA:   3'- guagCGgCUGCGGUaGCGGCuGCGgC- -5'
6816 5' -60.1 NC_001875.2 + 32442 0.66 0.751767
Target:  5'- --gCGCUG-CGCgAccCGCUGGCGCCGc -3'
miRNA:   3'- guaGCGGCuGCGgUa-GCGGCUGCGGC- -5'
6816 5' -60.1 NC_001875.2 + 23355 0.66 0.751767
Target:  5'- gGUUGC--ACGCCggGUUGCCGAUGUCGu -3'
miRNA:   3'- gUAGCGgcUGCGG--UAGCGGCUGCGGC- -5'
6816 5' -60.1 NC_001875.2 + 69193 0.66 0.751767
Target:  5'- aAUCGCguGCGCgG-CGCCGACgGCCa -3'
miRNA:   3'- gUAGCGgcUGCGgUaGCGGCUG-CGGc -5'
6816 5' -60.1 NC_001875.2 + 125062 0.66 0.751767
Target:  5'- gGUCGCUGAUGCCcugaaacaCGCCGcgaauGCGCgGc -3'
miRNA:   3'- gUAGCGGCUGCGGua------GCGGC-----UGCGgC- -5'
6816 5' -60.1 NC_001875.2 + 58219 0.66 0.751767
Target:  5'- --cCGCCGcagcCGCCGcaGCCGcCGCCGc -3'
miRNA:   3'- guaGCGGCu---GCGGUagCGGCuGCGGC- -5'
6816 5' -60.1 NC_001875.2 + 44434 0.66 0.746143
Target:  5'- gGUCGuuGaacgcgaucagcaagGCGCCGUCGgCGcaguGCGCCa -3'
miRNA:   3'- gUAGCggC---------------UGCGGUAGCgGC----UGCGGc -5'
6816 5' -60.1 NC_001875.2 + 10290 0.66 0.742374
Target:  5'- gGUgGUCGAgGCCuUUGCCGacuacGCGCUGg -3'
miRNA:   3'- gUAgCGGCUgCGGuAGCGGC-----UGCGGC- -5'
6816 5' -60.1 NC_001875.2 + 82388 0.66 0.742374
Target:  5'- --aCG-CGGCGaCCGUCGCUGAguCGCUGa -3'
miRNA:   3'- guaGCgGCUGC-GGUAGCGGCU--GCGGC- -5'
6816 5' -60.1 NC_001875.2 + 111765 0.66 0.742374
Target:  5'- aCGUgCGCCGACGaCUgguGUCGCUgguGACGgCGg -3'
miRNA:   3'- -GUA-GCGGCUGC-GG---UAGCGG---CUGCgGC- -5'
6816 5' -60.1 NC_001875.2 + 11185 0.66 0.742374
Target:  5'- aGUUGC--GCGCCGUUGUggagcaCGACGCCGc -3'
miRNA:   3'- gUAGCGgcUGCGGUAGCG------GCUGCGGC- -5'
6816 5' -60.1 NC_001875.2 + 31686 0.66 0.742374
Target:  5'- --gUGCCGGCGUgGacCGCCGcuugcGCGCCGc -3'
miRNA:   3'- guaGCGGCUGCGgUa-GCGGC-----UGCGGC- -5'
6816 5' -60.1 NC_001875.2 + 73759 0.66 0.742374
Target:  5'- aCGUgCGCaCG-CGCCAgacCGCCGACaGCgCGg -3'
miRNA:   3'- -GUA-GCG-GCuGCGGUa--GCGGCUG-CG-GC- -5'
6816 5' -60.1 NC_001875.2 + 5531 0.66 0.742374
Target:  5'- --aCGCCGGcCGCCGUUGa-GGCGCgCGu -3'
miRNA:   3'- guaGCGGCU-GCGGUAGCggCUGCG-GC- -5'
6816 5' -60.1 NC_001875.2 + 56312 0.66 0.742374
Target:  5'- nUAUCaCCaACGCCAUCaCCaACGCCGa -3'
miRNA:   3'- -GUAGcGGcUGCGGUAGcGGcUGCGGC- -5'
6816 5' -60.1 NC_001875.2 + 88529 0.66 0.742374
Target:  5'- --aCGCCGAC-CCG-CGCgCG-CGCCGc -3'
miRNA:   3'- guaGCGGCUGcGGUaGCG-GCuGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.