miRNA display CGI


Results 1 - 20 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6817 3' -58.2 NC_001875.2 + 131565 0.66 0.829517
Target:  5'- gGCCAgcauGCGgCGACGCCAgcaauacaacgacccCGCCG-CGc -3'
miRNA:   3'- gUGGU----UGCgGCUGCGGUa--------------GCGGCuGC- -5'
6817 3' -58.2 NC_001875.2 + 3064 0.66 0.828691
Target:  5'- gCGCgCAGCGgCG-CGCCGgggUCGCCcACGg -3'
miRNA:   3'- -GUG-GUUGCgGCuGCGGU---AGCGGcUGC- -5'
6817 3' -58.2 NC_001875.2 + 63436 0.66 0.828691
Target:  5'- gGCCcaacACGuCCGGCGUCGguUUGUCGGCGu -3'
miRNA:   3'- gUGGu---UGC-GGCUGCGGU--AGCGGCUGC- -5'
6817 3' -58.2 NC_001875.2 + 94959 0.66 0.828691
Target:  5'- uGCCGGCGgUG-UGCCGcgCGCaCGACGa -3'
miRNA:   3'- gUGGUUGCgGCuGCGGUa-GCG-GCUGC- -5'
6817 3' -58.2 NC_001875.2 + 6506 0.66 0.828691
Target:  5'- gCGCCAacACGCUGGcCGCCGUCcaCCGGu- -3'
miRNA:   3'- -GUGGU--UGCGGCU-GCGGUAGc-GGCUgc -5'
6817 3' -58.2 NC_001875.2 + 75678 0.66 0.828691
Target:  5'- gGCgAugGCGuuGGCGUCggCGUCGGCGa -3'
miRNA:   3'- gUGgU--UGCggCUGCGGuaGCGGCUGC- -5'
6817 3' -58.2 NC_001875.2 + 98184 0.66 0.828691
Target:  5'- uUACCAcgcCGCCGACGgCGUCGaggugagCGGCu -3'
miRNA:   3'- -GUGGUu--GCGGCUGCgGUAGCg------GCUGc -5'
6817 3' -58.2 NC_001875.2 + 50488 0.66 0.827862
Target:  5'- gGCCGGCGCgugcgcgCGGCaCCAgcgCGCCGcGCGg -3'
miRNA:   3'- gUGGUUGCG-------GCUGcGGUa--GCGGC-UGC- -5'
6817 3' -58.2 NC_001875.2 + 39100 0.66 0.827862
Target:  5'- uGCCAACGCUGcaguuccGCGCUccauggCGgCGACGa -3'
miRNA:   3'- gUGGUUGCGGC-------UGCGGua----GCgGCUGC- -5'
6817 3' -58.2 NC_001875.2 + 95313 0.66 0.827033
Target:  5'- gCGCCAGCGCCGuuugGCGaaaCAUCaauuugucguaaCCGGCGg -3'
miRNA:   3'- -GUGGUUGCGGC----UGCg--GUAGc-----------GGCUGC- -5'
6817 3' -58.2 NC_001875.2 + 97665 0.66 0.823696
Target:  5'- uGCgCGACGCCGacggcaacgaacaaaGCGCCAccauUCGCgcaGGCGa -3'
miRNA:   3'- gUG-GUUGCGGC---------------UGCGGU----AGCGg--CUGC- -5'
6817 3' -58.2 NC_001875.2 + 22577 0.66 0.820333
Target:  5'- aCGCCcGgGCgCGGCGCguUgGCCGGCc -3'
miRNA:   3'- -GUGGuUgCG-GCUGCGguAgCGGCUGc -5'
6817 3' -58.2 NC_001875.2 + 68159 0.66 0.820333
Target:  5'- gGCgAACGCUGcGCGCCG-CGCaaGACGa -3'
miRNA:   3'- gUGgUUGCGGC-UGCGGUaGCGg-CUGC- -5'
6817 3' -58.2 NC_001875.2 + 3549 0.66 0.820333
Target:  5'- uCACCGGCGCCGugGCg--CGUCu--- -3'
miRNA:   3'- -GUGGUUGCGGCugCGguaGCGGcugc -5'
6817 3' -58.2 NC_001875.2 + 41180 0.66 0.820333
Target:  5'- gCAgCAACGCC-ACGCCca--CCGACGg -3'
miRNA:   3'- -GUgGUUGCGGcUGCGGuagcGGCUGC- -5'
6817 3' -58.2 NC_001875.2 + 98017 0.66 0.820333
Target:  5'- gACgaGGCGuuuuucccCCGcGCGCCGUgCGCCGACGg -3'
miRNA:   3'- gUGg-UUGC--------GGC-UGCGGUA-GCGGCUGC- -5'
6817 3' -58.2 NC_001875.2 + 82972 0.66 0.820333
Target:  5'- -cUCGGCGaCCGAC-CCcUCGCUGAUGa -3'
miRNA:   3'- guGGUUGC-GGCUGcGGuAGCGGCUGC- -5'
6817 3' -58.2 NC_001875.2 + 9055 0.66 0.820333
Target:  5'- gCGCCGguuuccGCGCCGGuuucCGCCAacugCGCCuguGGCGa -3'
miRNA:   3'- -GUGGU------UGCGGCU----GCGGUa---GCGG---CUGC- -5'
6817 3' -58.2 NC_001875.2 + 7287 0.66 0.820333
Target:  5'- cCGCCAAagcgaccccgcCGCCGACcCCGacUCGCCG-Ca -3'
miRNA:   3'- -GUGGUU-----------GCGGCUGcGGU--AGCGGCuGc -5'
6817 3' -58.2 NC_001875.2 + 2275 0.66 0.820333
Target:  5'- gGCCAuguugACGUCGugaugcgcgcGCGCCGUgGCCGcGCGc -3'
miRNA:   3'- gUGGU-----UGCGGC----------UGCGGUAgCGGC-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.