miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6817 5' -57.7 NC_001875.2 + 75629 0.66 0.826199
Target:  5'- uGGCGUCGGCGUUggCGUCGGCGUCGGc -3'
miRNA:   3'- -UUGCGGCUGCGGuaGUGGUUGCGGCU- -5'
6817 5' -57.7 NC_001875.2 + 9803 0.66 0.826199
Target:  5'- -uUGCaCGGCGCCAUCGgCGGCuGCUa- -3'
miRNA:   3'- uuGCG-GCUGCGGUAGUgGUUG-CGGcu -5'
6817 5' -57.7 NC_001875.2 + 91841 0.66 0.826199
Target:  5'- -uUGCCGACuGCCGUUugCGGCuCCa- -3'
miRNA:   3'- uuGCGGCUG-CGGUAGugGUUGcGGcu -5'
6817 5' -57.7 NC_001875.2 + 28515 0.66 0.826199
Target:  5'- --aGCCGucGCGCacgCGUCGCCcggcACGCCGGu -3'
miRNA:   3'- uugCGGC--UGCG---GUAGUGGu---UGCGGCU- -5'
6817 5' -57.7 NC_001875.2 + 97569 0.66 0.826199
Target:  5'- aAGCGuuGACGCCGUgugaCACgcACGCgGAc -3'
miRNA:   3'- -UUGCggCUGCGGUA----GUGguUGCGgCU- -5'
6817 5' -57.7 NC_001875.2 + 16075 0.66 0.826199
Target:  5'- gGACGCacaCGGCGCCGguuUCGgCGcACGCCGc -3'
miRNA:   3'- -UUGCG---GCUGCGGU---AGUgGU-UGCGGCu -5'
6817 5' -57.7 NC_001875.2 + 86903 0.66 0.826199
Target:  5'- cGCGCCGGCGaaaaCGaggCGCUgaAGCGCCGc -3'
miRNA:   3'- uUGCGGCUGCg---GUa--GUGG--UUGCGGCu -5'
6817 5' -57.7 NC_001875.2 + 83299 0.66 0.826199
Target:  5'- cACGCacaCGugGCCcagCACCGGCGUCu- -3'
miRNA:   3'- uUGCG---GCugCGGua-GUGGUUGCGGcu -5'
6817 5' -57.7 NC_001875.2 + 128298 0.66 0.826199
Target:  5'- cGCGCCacGGCGCCGgUgACguGCGCCa- -3'
miRNA:   3'- uUGCGG--CUGCGGU-AgUGguUGCGGcu -5'
6817 5' -57.7 NC_001875.2 + 74605 0.66 0.826199
Target:  5'- cACGCUGACGaCCAaCAUCG-CGCCc- -3'
miRNA:   3'- uUGCGGCUGC-GGUaGUGGUuGCGGcu -5'
6817 5' -57.7 NC_001875.2 + 95410 0.66 0.825351
Target:  5'- cGCGCCGGCGUCGcaaagguaaggccUCG-CGGCGCCc- -3'
miRNA:   3'- uUGCGGCUGCGGU-------------AGUgGUUGCGGcu -5'
6817 5' -57.7 NC_001875.2 + 51792 0.66 0.817641
Target:  5'- uGACGCaCGGCGUCAUCaaagACCAGCuGCa-- -3'
miRNA:   3'- -UUGCG-GCUGCGGUAG----UGGUUG-CGgcu -5'
6817 5' -57.7 NC_001875.2 + 48427 0.66 0.817641
Target:  5'- aAACGUCGACGgCaAUUugC-AUGCCGAc -3'
miRNA:   3'- -UUGCGGCUGCgG-UAGugGuUGCGGCU- -5'
6817 5' -57.7 NC_001875.2 + 90037 0.66 0.817641
Target:  5'- cGGCGCCGGCGCgCGU-GCCGGCGg--- -3'
miRNA:   3'- -UUGCGGCUGCG-GUAgUGGUUGCggcu -5'
6817 5' -57.7 NC_001875.2 + 81611 0.66 0.817641
Target:  5'- aGAUGCCG-CGCCG-CGCCAAacgGCUGu -3'
miRNA:   3'- -UUGCGGCuGCGGUaGUGGUUg--CGGCu -5'
6817 5' -57.7 NC_001875.2 + 39354 0.66 0.817641
Target:  5'- uGACGCUGACGCC--CGCCGucucgUGCCu- -3'
miRNA:   3'- -UUGCGGCUGCGGuaGUGGUu----GCGGcu -5'
6817 5' -57.7 NC_001875.2 + 12074 0.66 0.817641
Target:  5'- cACGUCGccCGUCAgacgCACCGGCGgCGAg -3'
miRNA:   3'- uUGCGGCu-GCGGUa---GUGGUUGCgGCU- -5'
6817 5' -57.7 NC_001875.2 + 98948 0.66 0.817641
Target:  5'- cGCGCgCGuguucaGCCGUUugCAGCGCUGc -3'
miRNA:   3'- uUGCG-GCug----CGGUAGugGUUGCGGCu -5'
6817 5' -57.7 NC_001875.2 + 10866 0.66 0.817641
Target:  5'- cGACGCgGugGCCGcgUCGgUGGCGCUGc -3'
miRNA:   3'- -UUGCGgCugCGGU--AGUgGUUGCGGCu -5'
6817 5' -57.7 NC_001875.2 + 17113 0.66 0.817641
Target:  5'- -uCGCUGACGCac-CGCCAaaaauagcacACGCCGu -3'
miRNA:   3'- uuGCGGCUGCGguaGUGGU----------UGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.