miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6818 3' -61.4 NC_001875.2 + 36349 0.66 0.688038
Target:  5'- aCGCGGCCGGCGGCGaCuuugUCGucuCACAa -3'
miRNA:   3'- -GCGCUGGCUGCCGCcGu---GGCcu-GUGU- -5'
6818 3' -61.4 NC_001875.2 + 68138 0.66 0.688038
Target:  5'- cCGCGACCGAcaaaccgcauCGGCGaacGCugCGcGccGCGCAa -3'
miRNA:   3'- -GCGCUGGCU----------GCCGC---CGugGC-C--UGUGU- -5'
6818 3' -61.4 NC_001875.2 + 37566 0.66 0.688038
Target:  5'- aCGCGGCauCGAgUGGauGCGCCGG-CGCGa -3'
miRNA:   3'- -GCGCUG--GCU-GCCgcCGUGGCCuGUGU- -5'
6818 3' -61.4 NC_001875.2 + 82999 0.66 0.688038
Target:  5'- uCGUcGCCGGCGggcuugaaGCGGCGCCGuaGCGCGc -3'
miRNA:   3'- -GCGcUGGCUGC--------CGCCGUGGCc-UGUGU- -5'
6818 3' -61.4 NC_001875.2 + 30640 0.66 0.688038
Target:  5'- cCGuCGACaaACGGCaaguugGGCGCCGG-CACGu -3'
miRNA:   3'- -GC-GCUGgcUGCCG------CCGUGGCCuGUGU- -5'
6818 3' -61.4 NC_001875.2 + 113601 0.66 0.688038
Target:  5'- gGCGuuCGAguCGGCGGCggGCCGcGGCgGCAa -3'
miRNA:   3'- gCGCugGCU--GCCGCCG--UGGC-CUG-UGU- -5'
6818 3' -61.4 NC_001875.2 + 69264 0.66 0.678286
Target:  5'- cCGCGGCUcgagccguGGCGGCGGCAaguCCacccGCACAa -3'
miRNA:   3'- -GCGCUGG--------CUGCCGCCGU---GGcc--UGUGU- -5'
6818 3' -61.4 NC_001875.2 + 114000 0.66 0.678286
Target:  5'- uGUaAUCGGCGGcCGGCACCaucaugaGGCACAu -3'
miRNA:   3'- gCGcUGGCUGCC-GCCGUGGc------CUGUGU- -5'
6818 3' -61.4 NC_001875.2 + 22832 0.66 0.678286
Target:  5'- gGC-ACCGuCGGCGGCACgaCGuACGCGu -3'
miRNA:   3'- gCGcUGGCuGCCGCCGUG--GCcUGUGU- -5'
6818 3' -61.4 NC_001875.2 + 102929 0.66 0.678286
Target:  5'- aCGCGGCC-ACGGUcuuguugugggGGCGgCCGGGCu-- -3'
miRNA:   3'- -GCGCUGGcUGCCG-----------CCGU-GGCCUGugu -5'
6818 3' -61.4 NC_001875.2 + 65772 0.66 0.678286
Target:  5'- gGCGGCUGggcgagcacGCGcGCGGCGUCGGcGCGCGg -3'
miRNA:   3'- gCGCUGGC---------UGC-CGCCGUGGCC-UGUGU- -5'
6818 3' -61.4 NC_001875.2 + 125179 0.66 0.678286
Target:  5'- aGCGGCCGuuGcccagauuGCGcGUGCUGGGCACGu -3'
miRNA:   3'- gCGCUGGCugC--------CGC-CGUGGCCUGUGU- -5'
6818 3' -61.4 NC_001875.2 + 98892 0.66 0.6685
Target:  5'- gGCGACaUGGCGaGCGGCGCgCaaacuGACGCGc -3'
miRNA:   3'- gCGCUG-GCUGC-CGCCGUG-Gc----CUGUGU- -5'
6818 3' -61.4 NC_001875.2 + 83931 0.66 0.6685
Target:  5'- aCGCGugCuGCGGCaGCACCaccGCGCGa -3'
miRNA:   3'- -GCGCugGcUGCCGcCGUGGcc-UGUGU- -5'
6818 3' -61.4 NC_001875.2 + 65332 0.66 0.658686
Target:  5'- uGUuuGCCGGCGGCGGCACCuauUACu -3'
miRNA:   3'- gCGc-UGGCUGCCGCCGUGGccuGUGu -5'
6818 3' -61.4 NC_001875.2 + 49855 0.66 0.658686
Target:  5'- gCGCG-CCGGcCGGCGcGCcuuGCCGG-CGCc -3'
miRNA:   3'- -GCGCuGGCU-GCCGC-CG---UGGCCuGUGu -5'
6818 3' -61.4 NC_001875.2 + 74374 0.66 0.657703
Target:  5'- gCGCGGCCG-CGGCgcguucaGGCGCgGG-UACu -3'
miRNA:   3'- -GCGCUGGCuGCCG-------CCGUGgCCuGUGu -5'
6818 3' -61.4 NC_001875.2 + 66306 0.66 0.655738
Target:  5'- gCGCGGCCGGCgaguugauggcgugGGCGGCcGCCGuaagaaACGCc -3'
miRNA:   3'- -GCGCUGGCUG--------------CCGCCG-UGGCc-----UGUGu -5'
6818 3' -61.4 NC_001875.2 + 59106 0.66 0.648852
Target:  5'- --aGGCUGACGGCGuCGCUGGccgacGCGCAa -3'
miRNA:   3'- gcgCUGGCUGCCGCcGUGGCC-----UGUGU- -5'
6818 3' -61.4 NC_001875.2 + 29266 0.66 0.648852
Target:  5'- gCGCGGCCGcCGaCcGCGCCGGcgggGCGCGg -3'
miRNA:   3'- -GCGCUGGCuGCcGcCGUGGCC----UGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.