miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6818 5' -53.4 NC_001875.2 + 118072 0.66 0.964964
Target:  5'- gCGCGCUUCCUUAcauuACCaCCAUGGa--- -3'
miRNA:   3'- -GCGUGGAGGAAU----UGGcGGUACUaggg -5'
6818 5' -53.4 NC_001875.2 + 63904 0.66 0.957828
Target:  5'- gCGCGCCguggcgCC---GCCGCauCAUGAaCCCg -3'
miRNA:   3'- -GCGUGGa-----GGaauUGGCG--GUACUaGGG- -5'
6818 5' -53.4 NC_001875.2 + 81318 0.66 0.957828
Target:  5'- gGCGCCUCCUcc-UCGUCAUcGUgCCg -3'
miRNA:   3'- gCGUGGAGGAauuGGCGGUAcUAgGG- -5'
6818 5' -53.4 NC_001875.2 + 59104 0.66 0.957828
Target:  5'- gCGCACCUUg--GGCCGCUAcGAggaauacCCCa -3'
miRNA:   3'- -GCGUGGAGgaaUUGGCGGUaCUa------GGG- -5'
6818 5' -53.4 NC_001875.2 + 6504 0.66 0.953911
Target:  5'- cCGCGCCaaCacgcUGGCCGCCGUccaccGGUCCUc -3'
miRNA:   3'- -GCGUGGagGa---AUUGGCGGUA-----CUAGGG- -5'
6818 5' -53.4 NC_001875.2 + 83808 0.66 0.953911
Target:  5'- uCGUGCCUgugggcggcggCCacgUGGCCGCCAccacgaucUGGUUCCa -3'
miRNA:   3'- -GCGUGGA-----------GGa--AUUGGCGGU--------ACUAGGG- -5'
6818 5' -53.4 NC_001875.2 + 127184 0.66 0.953911
Target:  5'- aCGUACCUCgUUGAcCCGCac-GAUUUCg -3'
miRNA:   3'- -GCGUGGAGgAAUU-GGCGguaCUAGGG- -5'
6818 5' -53.4 NC_001875.2 + 96471 0.66 0.953911
Target:  5'- aGCGCCUCC--AGCUGCUccaccugcccGUGuAUCUCg -3'
miRNA:   3'- gCGUGGAGGaaUUGGCGG----------UAC-UAGGG- -5'
6818 5' -53.4 NC_001875.2 + 86928 0.66 0.951447
Target:  5'- aGCGCCgCCUagagugcgagggcgAGCCGCCAgcGUCCa -3'
miRNA:   3'- gCGUGGaGGAa-------------UUGGCGGUacUAGGg -5'
6818 5' -53.4 NC_001875.2 + 92657 0.66 0.949756
Target:  5'- gCGCACCguaaacgCCacgcAACCGCCGg---CCCg -3'
miRNA:   3'- -GCGUGGa------GGaa--UUGGCGGUacuaGGG- -5'
6818 5' -53.4 NC_001875.2 + 12161 0.66 0.949756
Target:  5'- aGCGCUUUCggcugaAGCCGCUGUGcgCCg -3'
miRNA:   3'- gCGUGGAGGaa----UUGGCGGUACuaGGg -5'
6818 5' -53.4 NC_001875.2 + 7107 0.67 0.940717
Target:  5'- gCGCGCUggCCgacaUUGACCGCCAcGcgCCg -3'
miRNA:   3'- -GCGUGGa-GG----AAUUGGCGGUaCuaGGg -5'
6818 5' -53.4 NC_001875.2 + 111547 0.67 0.940717
Target:  5'- gCGCACaaaauccgauagUUCCUUGugCGCCuuuaccGUG-UCCCa -3'
miRNA:   3'- -GCGUG------------GAGGAAUugGCGG------UACuAGGG- -5'
6818 5' -53.4 NC_001875.2 + 68576 0.67 0.930688
Target:  5'- gCGCACCgcguggcgCCgcUGGCCGCCGag--CCCg -3'
miRNA:   3'- -GCGUGGa-------GGa-AUUGGCGGUacuaGGG- -5'
6818 5' -53.4 NC_001875.2 + 86 0.67 0.930688
Target:  5'- aCGCGCCgcCCgauccGCCGCCGg---CCCa -3'
miRNA:   3'- -GCGUGGa-GGaau--UGGCGGUacuaGGG- -5'
6818 5' -53.4 NC_001875.2 + 3888 0.67 0.930688
Target:  5'- aCGCGCUUCag-AGCCGCCuu--UUCCg -3'
miRNA:   3'- -GCGUGGAGgaaUUGGCGGuacuAGGG- -5'
6818 5' -53.4 NC_001875.2 + 78344 0.67 0.925299
Target:  5'- gCGCACCgagUCCUUGagcgcguccACCaCCAUGGgcUCCUg -3'
miRNA:   3'- -GCGUGG---AGGAAU---------UGGcGGUACU--AGGG- -5'
6818 5' -53.4 NC_001875.2 + 21572 0.68 0.907635
Target:  5'- cCGCGCgCUCCgcGGCCaGCCGg---CCCa -3'
miRNA:   3'- -GCGUG-GAGGaaUUGG-CGGUacuaGGG- -5'
6818 5' -53.4 NC_001875.2 + 128749 0.68 0.907635
Target:  5'- cCGCGCC-CCggcgcguGCaCGCCGUGGgcgacCCCg -3'
miRNA:   3'- -GCGUGGaGGaau----UG-GCGGUACUa----GGG- -5'
6818 5' -53.4 NC_001875.2 + 18216 0.68 0.901252
Target:  5'- gGCGCCgucgCCgcucuuGCCGCCGcGG-CCCg -3'
miRNA:   3'- gCGUGGa---GGaau---UGGCGGUaCUaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.