miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6822 3' -55.4 NC_001875.2 + 12285 0.66 0.916439
Target:  5'- gGCCacCGUGUGCAGCCggcACGcCGcCGUg -3'
miRNA:   3'- -CGGcuGCACACGUUGG---UGCuGC-GCAa -5'
6822 3' -55.4 NC_001875.2 + 29561 0.66 0.916439
Target:  5'- uGCCGugGUG---AAgUACGACGCGg- -3'
miRNA:   3'- -CGGCugCACacgUUgGUGCUGCGCaa -5'
6822 3' -55.4 NC_001875.2 + 40831 0.66 0.916439
Target:  5'- gGCCGGcCGUGgGCAagacggcgcucGCCAaGACGCGc- -3'
miRNA:   3'- -CGGCU-GCACaCGU-----------UGGUgCUGCGCaa -5'
6822 3' -55.4 NC_001875.2 + 22921 0.66 0.916439
Target:  5'- cGCCGugucuugcauguACGUGUGUuugGACCggGCGGCGCc-- -3'
miRNA:   3'- -CGGC------------UGCACACG---UUGG--UGCUGCGcaa -5'
6822 3' -55.4 NC_001875.2 + 64260 0.66 0.912892
Target:  5'- aCCGACGggcucaucaucaagGUGCacauaAugUGCGACGCGUg -3'
miRNA:   3'- cGGCUGCa-------------CACG-----UugGUGCUGCGCAa -5'
6822 3' -55.4 NC_001875.2 + 86122 0.66 0.910479
Target:  5'- cGUgGACGUGgccaucgGCaGugCGCGGCGCGc- -3'
miRNA:   3'- -CGgCUGCACa------CG-UugGUGCUGCGCaa -5'
6822 3' -55.4 NC_001875.2 + 9601 0.66 0.910479
Target:  5'- gGUgGGCGcGUGCA---ACGACGCGUUu -3'
miRNA:   3'- -CGgCUGCaCACGUuggUGCUGCGCAA- -5'
6822 3' -55.4 NC_001875.2 + 69547 0.66 0.910479
Target:  5'- uCCGugGUGggucuUGCGACUAUGAUgGCGg- -3'
miRNA:   3'- cGGCugCAC-----ACGUUGGUGCUG-CGCaa -5'
6822 3' -55.4 NC_001875.2 + 15833 0.66 0.910479
Target:  5'- uGCCG-CGagacUGCAACCGCGAgaccaGCGUg -3'
miRNA:   3'- -CGGCuGCac--ACGUUGGUGCUg----CGCAa -5'
6822 3' -55.4 NC_001875.2 + 41818 0.66 0.910479
Target:  5'- cGCCGGCGcc-GCGGCCAguuGCGCGUc -3'
miRNA:   3'- -CGGCUGCacaCGUUGGUgc-UGCGCAa -5'
6822 3' -55.4 NC_001875.2 + 89159 0.66 0.906786
Target:  5'- cGCCGcGCGguuucGUGCAcgcuggcgcaaaucaGCCuCGACGCGg- -3'
miRNA:   3'- -CGGC-UGCa----CACGU---------------UGGuGCUGCGCaa -5'
6822 3' -55.4 NC_001875.2 + 18038 0.66 0.904277
Target:  5'- aUUGACGUGcaaUGCGACaugCGCGugGCGg- -3'
miRNA:   3'- cGGCUGCAC---ACGUUG---GUGCugCGCaa -5'
6822 3' -55.4 NC_001875.2 + 48017 0.66 0.904277
Target:  5'- aUCGugGUG-GCGGcCCACGugGCc-- -3'
miRNA:   3'- cGGCugCACaCGUU-GGUGCugCGcaa -5'
6822 3' -55.4 NC_001875.2 + 81056 0.66 0.904277
Target:  5'- aGCaCGGCGUaaugGUGC-GCCGCGAcgagaagagcCGCGUg -3'
miRNA:   3'- -CG-GCUGCA----CACGuUGGUGCU----------GCGCAa -5'
6822 3' -55.4 NC_001875.2 + 31604 0.66 0.904277
Target:  5'- cGCCGugcCGUGgGCgGACCACauGCGCGUg -3'
miRNA:   3'- -CGGCu--GCACaCG-UUGGUGc-UGCGCAa -5'
6822 3' -55.4 NC_001875.2 + 87663 0.66 0.897835
Target:  5'- cGCCGACGgucagcgcGUGCGaaaucgaggagaGCgACGACGUGc- -3'
miRNA:   3'- -CGGCUGCa-------CACGU------------UGgUGCUGCGCaa -5'
6822 3' -55.4 NC_001875.2 + 33949 0.66 0.897835
Target:  5'- cGCCGACGcccGCAacguGCCcguGCGGCGCGc- -3'
miRNA:   3'- -CGGCUGCacaCGU----UGG---UGCUGCGCaa -5'
6822 3' -55.4 NC_001875.2 + 68562 0.66 0.897835
Target:  5'- cGgCGGCGgcgGUcGCGcACCGCGugGCGc- -3'
miRNA:   3'- -CgGCUGCa--CA-CGU-UGGUGCugCGCaa -5'
6822 3' -55.4 NC_001875.2 + 44546 0.66 0.897835
Target:  5'- aUCGACGUuggGCAGCCGCGcguUGCGa- -3'
miRNA:   3'- cGGCUGCAca-CGUUGGUGCu--GCGCaa -5'
6822 3' -55.4 NC_001875.2 + 88185 0.66 0.897835
Target:  5'- gGUCGAgGcGUGC-ACCaACGGCGCGc- -3'
miRNA:   3'- -CGGCUgCaCACGuUGG-UGCUGCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.