miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6822 3' -55.4 NC_001875.2 + 69547 0.66 0.910479
Target:  5'- uCCGugGUGggucuUGCGACUAUGAUgGCGg- -3'
miRNA:   3'- cGGCugCAC-----ACGUUGGUGCUG-CGCaa -5'
6822 3' -55.4 NC_001875.2 + 114085 0.66 0.884246
Target:  5'- cGCCGcCGUGUccacaaGCGGCaugGCGACGCa-- -3'
miRNA:   3'- -CGGCuGCACA------CGUUGg--UGCUGCGcaa -5'
6822 3' -55.4 NC_001875.2 + 104139 0.66 0.884246
Target:  5'- cGCCu-CGuUGUGCGGCUcaaacgGCGGCGCGa- -3'
miRNA:   3'- -CGGcuGC-ACACGUUGG------UGCUGCGCaa -5'
6822 3' -55.4 NC_001875.2 + 15833 0.66 0.910479
Target:  5'- uGCCG-CGagacUGCAACCGCGAgaccaGCGUg -3'
miRNA:   3'- -CGGCuGCac--ACGUUGGUGCUg----CGCAa -5'
6822 3' -55.4 NC_001875.2 + 31604 0.66 0.904277
Target:  5'- cGCCGugcCGUGgGCgGACCACauGCGCGUg -3'
miRNA:   3'- -CGGCu--GCACaCG-UUGGUGc-UGCGCAa -5'
6822 3' -55.4 NC_001875.2 + 12285 0.66 0.916439
Target:  5'- gGCCacCGUGUGCAGCCggcACGcCGcCGUg -3'
miRNA:   3'- -CGGcuGCACACGUUGG---UGCuGC-GCAa -5'
6822 3' -55.4 NC_001875.2 + 41818 0.66 0.910479
Target:  5'- cGCCGGCGcc-GCGGCCAguuGCGCGUc -3'
miRNA:   3'- -CGGCUGCacaCGUUGGUgc-UGCGCAa -5'
6822 3' -55.4 NC_001875.2 + 22921 0.66 0.916439
Target:  5'- cGCCGugucuugcauguACGUGUGUuugGACCggGCGGCGCc-- -3'
miRNA:   3'- -CGGC------------UGCACACG---UUGG--UGCUGCGcaa -5'
6822 3' -55.4 NC_001875.2 + 30216 0.66 0.884246
Target:  5'- gGCCGuuGUG-GCGACCACuuuguacgugGuCGCGUUg -3'
miRNA:   3'- -CGGCugCACaCGUUGGUG----------CuGCGCAA- -5'
6822 3' -55.4 NC_001875.2 + 29561 0.66 0.916439
Target:  5'- uGCCGugGUG---AAgUACGACGCGg- -3'
miRNA:   3'- -CGGCugCACacgUUgGUGCUGCGCaa -5'
6822 3' -55.4 NC_001875.2 + 50488 0.66 0.884246
Target:  5'- gGCCGGCGcGUGCGcgcggcACCAgCGcgccGCGCGg- -3'
miRNA:   3'- -CGGCUGCaCACGU------UGGU-GC----UGCGCaa -5'
6822 3' -55.4 NC_001875.2 + 44546 0.66 0.897835
Target:  5'- aUCGACGUuggGCAGCCGCGcguUGCGa- -3'
miRNA:   3'- cGGCUGCAca-CGUUGGUGCu--GCGCaa -5'
6822 3' -55.4 NC_001875.2 + 53880 0.66 0.891157
Target:  5'- uGuuGGuCGUGcgGCcGCCGCGGCGCa-- -3'
miRNA:   3'- -CggCU-GCACa-CGuUGGUGCUGCGcaa -5'
6822 3' -55.4 NC_001875.2 + 37044 0.66 0.891157
Target:  5'- uGCaCGGCGcGUGCAcGCgCGCGgACGCGg- -3'
miRNA:   3'- -CG-GCUGCaCACGU-UG-GUGC-UGCGCaa -5'
6822 3' -55.4 NC_001875.2 + 40831 0.66 0.916439
Target:  5'- gGCCGGcCGUGgGCAagacggcgcucGCCAaGACGCGc- -3'
miRNA:   3'- -CGGCU-GCACaCGU-----------UGGUgCUGCGCaa -5'
6822 3' -55.4 NC_001875.2 + 54432 0.66 0.897178
Target:  5'- cGCCGaacagcGCGUG-GCGgucguuaGCCGCGGCGCc-- -3'
miRNA:   3'- -CGGC------UGCACaCGU-------UGGUGCUGCGcaa -5'
6822 3' -55.4 NC_001875.2 + 47666 0.66 0.891157
Target:  5'- -aCGcACGgacGCGGCCGCGGCGCGc- -3'
miRNA:   3'- cgGC-UGCacaCGUUGGUGCUGCGCaa -5'
6822 3' -55.4 NC_001875.2 + 68562 0.66 0.897835
Target:  5'- cGgCGGCGgcgGUcGCGcACCGCGugGCGc- -3'
miRNA:   3'- -CgGCUGCa--CA-CGU-UGGUGCugCGCaa -5'
6822 3' -55.4 NC_001875.2 + 18038 0.66 0.904277
Target:  5'- aUUGACGUGcaaUGCGACaugCGCGugGCGg- -3'
miRNA:   3'- cGGCUGCAC---ACGUUG---GUGCugCGCaa -5'
6822 3' -55.4 NC_001875.2 + 48017 0.66 0.904277
Target:  5'- aUCGugGUG-GCGGcCCACGugGCc-- -3'
miRNA:   3'- cGGCugCACaCGUU-GGUGCugCGcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.