miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6822 5' -55.4 NC_001875.2 + 10990 0.66 0.918329
Target:  5'- gCGACgaaGCGCUGcaGGCGcGCGuGCCCa -3'
miRNA:   3'- aGUUG---UGCGGCa-CCGUuUGCuCGGGc -5'
6822 5' -55.4 NC_001875.2 + 103104 0.66 0.917752
Target:  5'- -gGACACGUCGaucguggcucgcuUGGCGgcGGCGGcGCCCu -3'
miRNA:   3'- agUUGUGCGGC-------------ACCGU--UUGCU-CGGGc -5'
6822 5' -55.4 NC_001875.2 + 104126 0.66 0.914834
Target:  5'- aUCuacuGCGCGCCGUggggcccauucccguGGCGauaGACGcGUCCGa -3'
miRNA:   3'- -AGu---UGUGCGGCA---------------CCGU---UUGCuCGGGC- -5'
6822 5' -55.4 NC_001875.2 + 9641 0.66 0.912456
Target:  5'- --cGCGCGCCGUGcGUGuuucGCGAGCUUu -3'
miRNA:   3'- aguUGUGCGGCAC-CGUu---UGCUCGGGc -5'
6822 5' -55.4 NC_001875.2 + 77305 0.66 0.912456
Target:  5'- uUCAGCaguACGCCGaguacgcGGCGGugGccGGCCCc -3'
miRNA:   3'- -AGUUG---UGCGGCa------CCGUUugC--UCGGGc -5'
6822 5' -55.4 NC_001875.2 + 41851 0.66 0.912456
Target:  5'- ---cCGCGCCGcGGCG-GCGAGCUg- -3'
miRNA:   3'- aguuGUGCGGCaCCGUuUGCUCGGgc -5'
6822 5' -55.4 NC_001875.2 + 76938 0.66 0.912456
Target:  5'- aUAAgACGUaugugcaacUGGCGGACGAGUCCGc -3'
miRNA:   3'- aGUUgUGCGgc-------ACCGUUUGCUCGGGC- -5'
6822 5' -55.4 NC_001875.2 + 70238 0.66 0.912456
Target:  5'- aCAGCccgaaGCGCCGccGGCGccCGAGCCg- -3'
miRNA:   3'- aGUUG-----UGCGGCa-CCGUuuGCUCGGgc -5'
6822 5' -55.4 NC_001875.2 + 76881 0.66 0.912456
Target:  5'- gCGACGCGUCc-GGCAAACGcGCgCGc -3'
miRNA:   3'- aGUUGUGCGGcaCCGUUUGCuCGgGC- -5'
6822 5' -55.4 NC_001875.2 + 45737 0.66 0.906342
Target:  5'- gUCcACGCgaaGCCGUaaacgcGGCGc-CGAGCCCGa -3'
miRNA:   3'- -AGuUGUG---CGGCA------CCGUuuGCUCGGGC- -5'
6822 5' -55.4 NC_001875.2 + 73575 0.66 0.906342
Target:  5'- aCGACACcCCG-GGUGAcACGAGCgCCa -3'
miRNA:   3'- aGUUGUGcGGCaCCGUU-UGCUCG-GGc -5'
6822 5' -55.4 NC_001875.2 + 39673 0.66 0.906342
Target:  5'- gCGGCGCGCgGcGGCGAGCugcuaGAGUuuGa -3'
miRNA:   3'- aGUUGUGCGgCaCCGUUUG-----CUCGggC- -5'
6822 5' -55.4 NC_001875.2 + 10355 0.66 0.906342
Target:  5'- uUCAAauuGCGCCG-GGCu-ACG-GCCUGg -3'
miRNA:   3'- -AGUUg--UGCGGCaCCGuuUGCuCGGGC- -5'
6822 5' -55.4 NC_001875.2 + 30299 0.66 0.906342
Target:  5'- gCAACGCGuCCGUGGCc-GCGuGCa-- -3'
miRNA:   3'- aGUUGUGC-GGCACCGuuUGCuCGggc -5'
6822 5' -55.4 NC_001875.2 + 118437 0.66 0.906342
Target:  5'- uUUAACGgGcCCGU-GCAAGCGcGCCUGg -3'
miRNA:   3'- -AGUUGUgC-GGCAcCGUUUGCuCGGGC- -5'
6822 5' -55.4 NC_001875.2 + 105834 0.66 0.906342
Target:  5'- cUCGACGCgGCUGuUGGgGuccAGCGAGCCg- -3'
miRNA:   3'- -AGUUGUG-CGGC-ACCgU---UUGCUCGGgc -5'
6822 5' -55.4 NC_001875.2 + 50023 0.66 0.906342
Target:  5'- gCGugGuCGCCGggcGGCGAgGCGgccGGCCCGu -3'
miRNA:   3'- aGUugU-GCGGCa--CCGUU-UGC---UCGGGC- -5'
6822 5' -55.4 NC_001875.2 + 109267 0.66 0.906342
Target:  5'- cCAACGCGCCGcgcccgGGCGuuaaaacCGAGCgCu -3'
miRNA:   3'- aGUUGUGCGGCa-----CCGUuu-----GCUCGgGc -5'
6822 5' -55.4 NC_001875.2 + 48515 0.66 0.906342
Target:  5'- uUUGGCGCGCCGcccGGC--GCGcGCCCc -3'
miRNA:   3'- -AGUUGUGCGGCa--CCGuuUGCuCGGGc -5'
6822 5' -55.4 NC_001875.2 + 73224 0.66 0.899988
Target:  5'- cUCAGCACugGCCGUcaGGCuuuGCGAGUUUa -3'
miRNA:   3'- -AGUUGUG--CGGCA--CCGuu-UGCUCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.